Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5422g00003 ATGGCTATGTTTCTTGGCTATGCAGCAGCAACAATGGTAGCACTCTTCTGCATCGCACACTTCTTCCATCGGAGACTATGTTGCAGGTACCCCCTTTTCACAGATTACCCTATTCTTGGCATGATTCCACAGTTACTCTGCAATTTGTGGCGTTGCCATGATTTTTTCACTGAGGTGTTGAAACAGCACGGTGGAACCGGTGAGTTCACCGGACCATGGTTCACCAACATGAACTATTTGGTCACCATTGACCCTCTCAACGTGCACCACGTCATGAGCAAGAGTTTCCACAACTACGTCAAGGGACCCGTGTTTCGTGACATTTTTCAAGCCTTCGGAGACGGGATTTTCACCGCTGATTCAGAAACCTGGAAATTCAACAGGGATCTCTTCCATTCTCTCTTTAAGCAGAAAAGCTTTGAGGTGTTTCTGGAGAAAACCATTCACAACAAGGTTCAGAATAGCTTACTTCCCGTATTGGATCATGTGCAGCAACAAGGAAGCGTGGTGGATCTTCAAGATGTCTTCAACCGCTTCACTTTCGATAACATATGTTCTATAGTTCTTGGCAATGACCCGAATTGTCTTTCCGTTGATTTTCCCGAAGTTGAAATCGAGAAGGCTTTTAACGAAGCGGAAGAGTCCATATTCCACAGACACGTTGTGCCAAGGTGTGTTTGGAAGCTGCAGAAATGGCTTCAGATTGGTCAAGAGAAGAAGATGACTGAAGCATGTAGAACACTTGATGAGTTCATATATTCATGCATAGCGTCCAAGAGAGAAGATCTAAGCAGGAACGTGGAAAATGAAACGGGAGAAAGTTTTCATGTTGATTTGTTAACAACTTTGATGAGAGAAGGAAAGGGAAAAGGAGAAGCAGATGAGGATATATTTCTAAGGGATGCTGTGTTCAATCTTTTTGTGGCTGGGAGAGATACCTTAACTTCAGCTCTCTCATGGTTCTTTTGGCTTGTTGCTACAAACCCTTTGGTGGAAGCCAAGATTTTTGAAGAGATGAATGAAAAGTTTGGAAGCAACGAAAAGACAGTTTTGAGTGCAGATGAGGTGAAAAAGCTGGTTTATCTACACGGTGCTATGTGTGAATCATTGAGGCTGTTTCCTCCCATACCCTTCGAACGCAAACAAGCACTTAAAGCTGACGTGCTTCCAAGTGGTCATGATGTTAATCCCAACACAGTTATACTGTTTTGTTTGTATTCAATGGGGAGATTTGAGGAAATATGGGGGAAAGATTGCATGGAGTTGAAGCCAGAGAGATGGATCTCACAGAAAGGAGGTAATGTTTATGTACCATCTTACAAATTCATTGCTTTCAATGCAGGACCAAGAACTTGCTTGGGGAAAGACTCGTCCTTTGTTCAAATGAAGATGGTGGCAACTGCTATTTTGCAGAAGTATCATGTTCAAGTGGTGGAAGGTTGTGTTGCTAAGCCAAACCTTTCAATCGTTCTTCTAATGAAGGATGGTTTAAAGGTTAAGTTAACAAAGAGAGAAACTTAA 1521 0.4254 MAMFLGYAAATMVALFCIAHFFHRRLCCRYPLFTDYPILGMIPQLLCNLWRCHDFFTEVLKQHGGTGEFTGPWFTNMNYLVTIDPLNVHHVMSKSFHNYVKGPVFRDIFQAFGDGIFTADSETWKFNRDLFHSLFKQKSFEVFLEKTIHNKVQNSLLPVLDHVQQQGSVVDLQDVFNRFTFDNICSIVLGNDPNCLSVDFPEVEIEKAFNEAEESIFHRHVVPRCVWKLQKWLQIGQEKKMTEACRTLDEFIYSCIASKREDLSRNVENETGESFHVDLLTTLMREGKGKGEADEDIFLRDAVFNLFVAGRDTLTSALSWFFWLVATNPLVEAKIFEEMNEKFGSNEKTVLSADEVKKLVYLHGAMCESLRLFPPIPFERKQALKADVLPSGHDVNPNTVILFCLYSMGRFEEIWGKDCMELKPERWISQKGGNVYVPSYKFIAFNAGPRTCLGKDSSFVQMKMVATAILQKYHVQVVEGCVAKPNLSIVLLMKDGLKVKLTKRET 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5422g00003 506 Pfam Cytochrome P450 35 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00003 506 PANTHER CYTOCHROME P450 23 499 - -
Vium5422g00003 506 Gene3D Cytochrome P450 22 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00003 506 PRINTS E-class P450 group I signature 452 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00003 506 PRINTS E-class P450 group I signature 442 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00003 506 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00003 506 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00003 506 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 445 454 IPR017972 GO:0005506|GO:0016705
Vium5422g00003 506 PRINTS P450 superfamily signature 452 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00003 506 PRINTS P450 superfamily signature 443 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00003 506 PRINTS P450 superfamily signature 364 375 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00003 506 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00003 506 SUPERFAMILY Cytochrome P450 35 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00003 506 CDD CYP86A 68 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5422g00003 Vium-Chr5422 15404 17324 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5422g00003 13 504 Cytochrome P450 AT4G39490 48.148 2.16e-168 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5422g00003 - - gmx:100792360 845.114