Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5422g00002 ATGCTTTTCTATGCAACAATAATAGCATCATTCTTATGCTCCCTATACTTGTTCCATCGCAGAAGATCTAGCAAACACCCCCTCTTGAGAGATTACCCCATCCTTGGAATGTTGCCACCAGTGCTTTTCAACTTGTGGCGTGTTCATGATTTTTTCACGGAGGTGCTAACAAAACATGGTGGCACTGGGGAGTTCAAAGGACCATGGTTCGCCGATATGAACTATTTGGTCACTTGTGACTCCCTCAACGTGCAACACATGTTGTGCAAGAACTTCGACAACTATGTCAAGGGACATGACTTTCGTGACATTTTCGAACCATTCGGAGATGGGTTTGTCACTGCCGATTATGAGACATGGAAGTACATCAGAACCATTCTCCATTCTCTGATGAAACAGCCAAGACTCAAAGCATTCGTCGATCAAACCGTTCAGAAGAAGATACTTACAAGCCTGCTTCCAATATTGAATCATGCACAACAACATGGGAGGGTGGTGGATCTTCAAGATCTCCTCTTGCGATTCACTTTTGATAACATATTCTTAACAACCGTAGGACACGATCCTAAGTGTCTTTCCATTGACTTCCCCGTAGTTGCAGTTGAGAAGGCTTTCAGAGTGTCTGAAAAGTCGATATTCTACAGACACACGGTGCCGTACACTGTATGGAAATTCCAAAAGTGGCTCCAAATTGGTCAAGAGAAGAAGATGACAGAAGCATGTAGAACAATTGATAAGTTCATATATTCACTCATAGAGTCCAAGCGAGAAGAGTTAAGCAAGTGCACAGAAGAAGAAATGAATGAAGCTCCATCTGACATGCTAACTGTTTTGATGACAGAACATGGAGGGAGTGAGCATGATGATAAGTTCGTAAGGGATTTTGCATTTAACTTTCTTGTAGCGGGGAGGGGATCCATGGCTTCGACTCTTACCTGGTTCTTTTGGCTTCTTATCAAACACCCTATAGTGGAAGCCAAGATTCTTCAAGAGATCAGAGATAATTTTAAGAAAAATGATGACCGTGGTCATGGCTTTGATGAGGAGCAGGATCTGAGCCAATCTGTGAAAAAGCTGGTTTATCTGCATGCTGCATTGTGTGAATCTCTGAGACTTTTCCCTCCATTACCTATTCAACGGAAGCAAGCAGTTAAAGCTGACACTCTTCCAAGCGGGCATATAGTAAGTGCCAATACAATGATAATGCTTTCTTTTTATGCAATGGGAAGGTGTGAAGAGATATGGGGAAAAGATTGTTTGGAGTTCAAGCCAGAGAGATGGATATCTGAAAGAGGAGAGATTGTTAATGTAGCATCATACAAATTCATTGCTTTTAATGCAGGACCAAGAACTTGTTTGGGAAAGGAGTCGTCTTTTCTTCAAATGAAGATGCTGACAGCTACTATGTTGTGGAAATATCGTTTTGAAGTGGTGGAAGGTCATGTTATCAGTCCAAGCCGTTCGTTTGGGCTTTCCATGAAGAACGGGTTGAAGGTTAGGATAATGAAAAGAGAACTTTAA 1521 0.4188 MLFYATIIASFLCSLYLFHRRRSSKHPLLRDYPILGMLPPVLFNLWRVHDFFTEVLTKHGGTGEFKGPWFADMNYLVTCDSLNVQHMLCKNFDNYVKGHDFRDIFEPFGDGFVTADYETWKYIRTILHSLMKQPRLKAFVDQTVQKKILTSLLPILNHAQQHGRVVDLQDLLLRFTFDNIFLTTVGHDPKCLSIDFPVVAVEKAFRVSEKSIFYRHTVPYTVWKFQKWLQIGQEKKMTEACRTIDKFIYSLIESKREELSKCTEEEMNEAPSDMLTVLMTEHGGSEHDDKFVRDFAFNFLVAGRGSMASTLTWFFWLLIKHPIVEAKILQEIRDNFKKNDDRGHGFDEEQDLSQSVKKLVYLHAALCESLRLFPPLPIQRKQAVKADTLPSGHIVSANTMIMLSFYAMGRCEEIWGKDCLEFKPERWISERGEIVNVASYKFIAFNAGPRTCLGKESSFLQMKMLTATMLWKYRFEVVEGHVISPSRSFGLSMKNGLKVRIMKREL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5422g00002 506 Pfam Cytochrome P450 47 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00002 506 PRINTS E-class P450 group I signature 363 381 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00002 506 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00002 506 PRINTS E-class P450 group I signature 442 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00002 506 PRINTS E-class P450 group I signature 452 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00002 506 Gene3D Cytochrome P450 14 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00002 506 PRINTS P450 superfamily signature 452 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00002 506 PRINTS P450 superfamily signature 443 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00002 506 PRINTS P450 superfamily signature 364 375 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00002 506 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00002 506 PANTHER CYTOCHROME P450 19 499 - -
Vium5422g00002 506 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 445 454 IPR017972 GO:0005506|GO:0016705
Vium5422g00002 506 CDD CYP86A 64 497 - -
Vium5422g00002 506 SUPERFAMILY Cytochrome P450 16 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5422g00002 Vium-Chr5422 7615 9185 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5422g00002 7 506 Cytochrome P450 AT4G39490 43.640 1.67e-147 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5422g00002 - - vra:106752766 795.423