Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5422g00001 ATGCACAAACAATTTCTCGTTTTCGATATGGCCATGTTTCTTCTCTATGCAACCTTATTAGCATCATTCCTTTGCTCCCTATACTTCTTCCATCGCAGAACACAATGCATACACCCCCTCTTGAGAGATTACTTCATTCTCGGCATGCTACCGCCGGTGCTCTTCAACCTGTGGAGGATCCATGATTTTATCACTGAGGTTCTGAAACTTCGTGGTGGCACCGGGGAGTTCAAAGGGCCATGGTTCACCAAAATGAACTATTTGATCACTTGTGACTCCCTCAACGTGCAACACATGCTGTGCAAGCGCTTCGACAACTACATCAAGGGACCCGAGTTTCGTGAGATTTTCGAACCCTTCGGAGATGGGGTTGTCACTGCCGATTCAGAGACATGGAAGTACTTCAGAACCGTTCTCCATTCTTTGATCAAACAAAGAAGGTTCGAAATGTTTGTTGATCAAACAGTTCAGAAGAAAGTGTACACAAGCCTGCTTCCGATATTGGATCATGCACAACAACAAGGAAGAGTGGTGGATCTTCAGGATATCTTCAACCGATTCACATTCGATAACATATGCTCCACAATCGTAGGACACGATCCTAAGTGTCTTTCCATTGACTTTCCCGAAGTTGCGATCGAAAAGGCTTTTAATGAGTGTGAAGAGTCGATATTCTACAGACACGTAGTGCCGGGAAGTGTTTGGAAGCTCCAAAAATGGCTCAAAATTGGTCAAGAGAAGAAGATGACAGAGGCGTGCAGAACGTTTGACGATTTCATATATTCATGCATAGCGTCCAAGCGAGAAGAGTTAAGCAAGTGCAGCAGAGAAGAAACGGAGGAAGCTCCTTTTGACTTGCTTACTGCTTTGATCACAGAAGAGAGAGGACGTTTGCATGATGACAAGTTTCTAAGAGATGATGCGTTTAACTTCTTTGTTGCAGGGAGAGAAACCATGACTTCAGCTCTTACGTGGTTCTTTTGGCTTATTGCTAAACACCCTTTAGTGGAAGCCAAGATTCTTGAAGAGATCAGAGATCATTTTAAGACAGATGAAAAGAAAAACGATGACTGTCGTGACCAAGGTTTTCATGAGGACCATCATGATCATAATCTTGATCAAGAACAGTATCTGGAGAAATCTCTATCTGGGAAAGTTTTGGGCATGCAAGAGGTGAAAAAGCTGGTTTATCTGCATGGTGCTTTGTGTGAAGCTCTGAGACTTTTCCCTCCAGTACCCATTGAACGGAAGCAAGCAGTTAAAGCCGACACTCTTCCAAGTGGGCATAGAGTAAATGGCAATACAATGATAATGTTTTCTCTGTATGCGATGGGAAGGTGTGAAGAGATATGGGGAAAAGATTGTTTGGAGTTCAAGCCAGAAAGATGGATATCTGAGAGAGGAGAAATAGTTTATGCACCAGCTTACAAATTCATTGCTTTTAATGCAGGACCAAGAATCTGTTTAGGTAAAGATTTGGCGTTTCTCCAAATGAAGATGGTGGCTGCTGCTACTTTGAGGAAGTACTGTTTCAAAGTGGTGGAAGATCATGTTGCAACTCCAACACATTCCATTGTTCTTCTCATGAAGAACGGTTTGAAGGCTAGGATAATGAAAAGAGAAGTTTGA 1629 0.4273 MHKQFLVFDMAMFLLYATLLASFLCSLYFFHRRTQCIHPLLRDYFILGMLPPVLFNLWRIHDFITEVLKLRGGTGEFKGPWFTKMNYLITCDSLNVQHMLCKRFDNYIKGPEFREIFEPFGDGVVTADSETWKYFRTVLHSLIKQRRFEMFVDQTVQKKVYTSLLPILDHAQQQGRVVDLQDIFNRFTFDNICSTIVGHDPKCLSIDFPEVAIEKAFNECEESIFYRHVVPGSVWKLQKWLKIGQEKKMTEACRTFDDFIYSCIASKREELSKCSREETEEAPFDLLTALITEERGRLHDDKFLRDDAFNFFVAGRETMTSALTWFFWLIAKHPLVEAKILEEIRDHFKTDEKKNDDCRDQGFHEDHHDHNLDQEQYLEKSLSGKVLGMQEVKKLVYLHGALCEALRLFPPVPIERKQAVKADTLPSGHRVNGNTMIMFSLYAMGRCEEIWGKDCLEFKPERWISERGEIVYAPAYKFIAFNAGPRICLGKDLAFLQMKMVAAATLRKYCFKVVEDHVATPTHSIVLLMKNGLKARIMKREV 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5422g00001 542 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 481 490 IPR017972 GO:0005506|GO:0016705
Vium5422g00001 542 Pfam Cytochrome P450 55 527 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00001 542 PRINTS E-class P450 group I signature 303 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00001 542 PRINTS E-class P450 group I signature 323 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00001 542 PRINTS E-class P450 group I signature 478 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00001 542 PRINTS E-class P450 group I signature 488 511 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00001 542 CDD CYP86A 76 533 - -
Vium5422g00001 542 PRINTS P450 superfamily signature 314 331 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00001 542 PRINTS P450 superfamily signature 400 411 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00001 542 PRINTS P450 superfamily signature 479 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00001 542 PRINTS P450 superfamily signature 488 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00001 542 MobiDBLite consensus disorder prediction 353 372 - -
Vium5422g00001 542 SUPERFAMILY Cytochrome P450 28 540 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00001 542 Gene3D Cytochrome P450 30 542 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5422g00001 542 PANTHER CYTOCHROME P450 29 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5422g00001 Vium-Chr5422 1314 3178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5422g00001 22 540 Cytochrome P450 AT4G39490 42.992 2.93e-152 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5422g00001 - - var:108344608 979.163