Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5420g00001 ATGTTGAACAAGAAACCACCGTTGTTATGGCTTTCTCTCCTCATCACATGCTTCTTCTCTTTCCACACCTGTACTTCACTCGCAGCTTTGACCACCATCTCAGCATATCAATCTCTCTCTGGGGATCAAACTCTTGTCTCCCAAAACGGAACCTTTGAATTGGGTTTCATCACCACAGGTAACAACTCTAAATACTATATAGGCATGTGGTACAGAAAGATATCTCAAAAGACTTATGTTTGGGTCGCAAATAGAGACGACCCAGTTTCTGATAAGAATTCTGCTAAATTAACAATATTGGATGGTAATTTAGTGGTCTTAGACCAGTCCCAAAATATAGTTTGGTCAACGAATTTGAGTTCTCCTAGCTCAGGTTCTGTGGTAGCCGTGCTTCTAGATTCTGGGAATCTTATATTAAGTGATAGGGCTAATGCATCGGCAACTGATGCTATGTGGCAGAGTTTTGATCACCCCACAGACACGTGGCTTCCCGGTGGCAAGATAAGTTTGAACAACGTAACAAAGAAGCCACAGTATCTGACTTCATGGAAGAATGTTGAAGATCCTGCAACGGGAATGTTCTCTCTTGAACTAGACCCTGAAGGAAGCAATTCGTATTTGATTCGTTGGAATAAAACTGAGCAGTATTGGTCAAGTGGTTCTTGGAATGGACAAATTTTCAGCTTGGTTCCTGAGATGAGACTAAACTACATCTACAATTTCACCTTTGTGTCCAACGAGAACGAGAGCTACTTCACCTACTCCTTGTATAACGAGTCTATTATATCTCGCTTTTTTATGGATGTCTCGGGTCAGATTAAGCAACTGACGTGGCTGGAGAATGCTCAGCAGTGGAATTTGTTCTGGTCTCAGCCTCGGCAACAGTGTGAGGTGTATGCCTTCTGTGGTGGATTTGGGACCTGCACTGAGAACTCCATGCCATATTGTAGTTGTTTGACTGGGTACGAGCCAAAGTCACAATCTGATTGGAATCTTACGGATTACTCAGGGGGGTGTGTGAGAAAGTCGGAGTTGCAATGTGCCTCACCAAACTCCTCTAACAAGGACAGTGACAGGTTCCTTTCAATTCTCAACATGAAATTGCCTAATCATTCACAATCCATAGGAGCCGAGAATGTTGGGGAATGTCAAGCAACATGCTTGAGTAACTGTTCTTGTACTGCATATGCTTATGACAATAATGGTTGTTCAATTTGGTATGGTGATCTCTTGAACCTGCAACAGCTTACTCAAGATGACAGCAGTGGGCAGACTTTGTTTCTCAAACTTGCAGCGTCTGAGTTTCATGATTCTAAAAGCAATAAAGGGACACTCATTGGTGCTGTTGCTGGAGCTGTTGGTGGTGTGGTGGTTCTTCTAGTTGTTTTGGTGTTTGTGATTCTGCGGCGCAGAAAGAGACATGTTGGGACAGGAACATCTGTGGAGGGCTCATTGGTGGCATTTGGGTATAGGGATTTGCAAAATGCCACGAAGAATTTCTCAGAGAAACTGGGAGGAGGGGGTTTTGGCTCTGTCTTCAAAGGAACATTGTCTGATTCTAGTGTCATTGCAGTGAAGAAGCTTGAAAGCATTAGCCAAGGTGAGAAGCAGTTCAGAACAGAAGTGAGCACAATTGGGACAGTCCAACATGTGAATCTTGTAAGGCTTCGCGGGTTCTGTTCCGAAGGTACTAAAAAACTTCTGGTTTATGATTACATGCCAAATGGTTCCTTGGATTCGAAAATGTTTCAGGAAGATAGCTCAAAGGTGTTGGATTGGAAACTGAGGTACCAAATTGCTCTTGGAACAGCAAGAGGGTTGACTTACCTTCACGAGAAGTGTAGAGACTGCATCATACACTGTGATGTGAAGCCAGAAAACATTCTCCTTGATGCTGATTTTGTTCCAAAGGTGGCAGACTTTGGCCTTGCAAAGCTGGTTGGAAGGGACTTCAGCAGGGTCCTCACTACCATGAGAGGGACAAGAGGTTATCTTGCCCCAGAGTGGATATCAGGTGTGGCTATCACTGCCAAAGCTGATGTCTACAGCTATGGAATGATGCTTTTCGAGTTTGTGTCAGGTAGGAGGAACTCTGAGGCATCGAAAGATGGTGAAGTGAGATTCTTCCCTACTTTTGCTGCAAACACTGTCCACCAAGAAGGGAATGTGCTTAGCTTGTTGGACCCTAGGTTGGAGGGAAATGCTGACATTGAAGAGGTCACTAGAGTCATAAAAATTGCTTCATGGTGTGTCCAAGATGATGAATCTCATAGACCTTCCATGGGTCAGGTGGTTCAAATCCTTGAAGGGTTCTTGGATGTGACTTTGCCTCCAATTCCAAGGACCCTTCAAGCCTTTGTTGACAACCATGAGAACATAGTTTTCTTCACTGACTCCAGCTCCACCCAGAGTTCACAGGTAAAGAGTACCTCCTCTCAAGCCAAGAGCAATACCTCATCCAATAATTCTCAGTCCTCATGA 2481 0.4405 MLNKKPPLLWLSLLITCFFSFHTCTSLAALTTISAYQSLSGDQTLVSQNGTFELGFITTGNNSKYYIGMWYRKISQKTYVWVANRDDPVSDKNSAKLTILDGNLVVLDQSQNIVWSTNLSSPSSGSVVAVLLDSGNLILSDRANASATDAMWQSFDHPTDTWLPGGKISLNNVTKKPQYLTSWKNVEDPATGMFSLELDPEGSNSYLIRWNKTEQYWSSGSWNGQIFSLVPEMRLNYIYNFTFVSNENESYFTYSLYNESIISRFFMDVSGQIKQLTWLENAQQWNLFWSQPRQQCEVYAFCGGFGTCTENSMPYCSCLTGYEPKSQSDWNLTDYSGGCVRKSELQCASPNSSNKDSDRFLSILNMKLPNHSQSIGAENVGECQATCLSNCSCTAYAYDNNGCSIWYGDLLNLQQLTQDDSSGQTLFLKLAASEFHDSKSNKGTLIGAVAGAVGGVVVLLVVLVFVILRRRKRHVGTGTSVEGSLVAFGYRDLQNATKNFSEKLGGGGFGSVFKGTLSDSSVIAVKKLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGTKKLLVYDYMPNGSLDSKMFQEDSSKVLDWKLRYQIALGTARGLTYLHEKCRDCIIHCDVKPENILLDADFVPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEFVSGRRNSEASKDGEVRFFPTFAANTVHQEGNVLSLLDPRLEGNADIEEVTRVIKIASWCVQDDESHRPSMGQVVQILEGFLDVTLPPIPRTLQAFVDNHENIVFFTDSSSTQSSQVKSTSSQAKSNTSSNNSQSS 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5420g00001 826 PIRSF SRK 3 823 IPR024171 GO:0004674
Vium5420g00001 826 Gene3D Transferase(Phosphotransferase) domain 1 573 775 - -
Vium5420g00001 826 SUPERFAMILY Protein kinase-like (PK-like) 484 806 IPR011009 -
Vium5420g00001 826 FunFam Serine/threonine-protein kinase 465 572 - -
Vium5420g00001 826 SMART serkin_6 498 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5420g00001 826 ProSitePatterns Protein kinases ATP-binding region signature. 504 527 IPR017441 GO:0005524
Vium5420g00001 826 MobiDBLite consensus disorder prediction 801 826 - -
Vium5420g00001 826 PANTHER OS07G0415500 PROTEIN 11 780 - -
Vium5420g00001 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Vium5420g00001 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 223 IPR036426 -
Vium5420g00001 826 FunFam Serine/threonine-protein kinase 25 155 - -
Vium5420g00001 826 SMART ntp_6 355 430 IPR003609 -
Vium5420g00001 826 ProSiteProfiles Protein kinase domain profile. 498 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5420g00001 826 Gene3D - 26 155 IPR036426 -
Vium5420g00001 826 SMART blect_4 36 158 IPR001480 -
Vium5420g00001 826 Gene3D Phosphorylase Kinase; domain 1 464 572 - -
Vium5420g00001 826 ProSiteProfiles PAN/Apple domain profile. 347 431 IPR003609 -
Vium5420g00001 826 Pfam Protein kinase domain 501 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5420g00001 826 ProSiteProfiles Bulb-type lectin domain profile. 30 152 IPR001480 -
Vium5420g00001 826 FunFam Serine/threonine-protein kinase 573 776 - -
Vium5420g00001 826 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544
Vium5420g00001 826 Pfam PAN-like domain 354 412 IPR003609 -
Vium5420g00001 826 CDD B_lectin 37 158 IPR001480 -
Vium5420g00001 826 Pfam D-mannose binding lectin 78 184 IPR001480 -
Vium5420g00001 826 CDD STKc_IRAK 504 771 - -
Vium5420g00001 826 CDD PAN_AP_plant 345 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5420g00001 Vium-Chr5420 2630 5724 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5420g00001 480 778 Receptor kinase-like Gene Family AT5G20050 44.762 6.87e-79 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium5420g00001 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5420g00001 - - gmx:100782119 1402.11