Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5419g00010 ATGAGGGAATGGGGTGTGGTTGCTTTGCTGTTATCCATAGAGTTCTTGGATGTGATTGTGTACACTCTAAGCAAAGCAGCCATGAAGAAGGGCATGAATGATTTTGTGTTCGTCATGTACTCCAATGCATTGGCATCTTGCTTACTTCTTCCCTTAACCTTATTCTTTCACAGGAAAAGAGCTCCTCCGCCACTCACTTATTCCTTGGTGGGCCAAATATTTGTTAATGGCTTGTTAAGTTGCAGTGTTCAGATGCTAAGGTTTTTTGGAATCGGTTTCAGCTCTCCTACTTTAGCAACTGCAATGTCTGACTTAATCCCTGCTTTTACCTTCATACTTGCCATCTTCTTCAGGATGGAAAAATTGGATTGGAAAACTAACAGCACACAGGCCAAGGCCATTGGGACATTTGTATCAATCACTGGAGCCTTGATAATTACTCTGTACAAGGGCCAGGCAATCATAAATAATCATCCGTCTAATAAATTGTTTCCCAAAAACCTCGTTTCATCTGAAAATTTTGATTGGGTAATTGGAGCAGTGTTACTTGCGGGTCATAGCTTTGTTCTCTCGTTGTTGTTTATAGTTCAGACATGGATAATCAGAAATTACCCTGCAGAGCTTATGGTGGTACTCATTCGCGGTACATTAGTAGCTCTGCTATCTGTTCCAGCTTCACTGATTTCAGTTAAGGATCCAAAGGCTTTGAGATTGGGATTTGATGTGCAGTTGATAGCTATTATATGTCAAGCAATTTTCAGCGTATCCTTTCGAAGTGTTGTTCATATATGGGTGATGGGAAAGAAGGGCCCTCTCTATGTTGCAATGTTTAAGCCAATTGGAATAGTCTTTGCGGCCATAATGGGAATTTCGTTACTGGGTGACTCTCTCTATCTTGGCAGTGTGCTTGGAGCAGCCATAGTGGTGATTGGTTTTTATGGTGTTCTTTGGGGAAAAAGCCAAGAGAGAACGAAGGAAGAGAGTGAAGATCATACGTTGGAATCATCCTCGCCCGTTGCCCCTCTTTTGCAGAACAAGAGAATGGAAGAATAG 1053 0.4188 MREWGVVALLLSIEFLDVIVYTLSKAAMKKGMNDFVFVMYSNALASCLLLPLTLFFHRKRAPPPLTYSLVGQIFVNGLLSCSVQMLRFFGIGFSSPTLATAMSDLIPAFTFILAIFFRMEKLDWKTNSTQAKAIGTFVSITGALIITLYKGQAIINNHPSNKLFPKNLVSSENFDWVIGAVLLAGHSFVLSLLFIVQTWIIRNYPAELMVVLIRGTLVALLSVPASLISVKDPKALRLGFDVQLIAIICQAIFSVSFRSVVHIWVMGKKGPLYVAMFKPIGIVFAAIMGISLLGDSLYLGSVLGAAIVVIGFYGVLWGKSQERTKEESEDHTLESSSPVAPLLQNKRMEE 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5419g00010 350 Pfam EamA-like transporter family 9 147 IPR000620 GO:0016020
Vium5419g00010 350 PANTHER WAT1-RELATED PROTEIN 7 327 IPR030184 GO:0016020|GO:0022857
Vium5419g00010 350 SUPERFAMILY Multidrug resistance efflux transporter EmrE 42 150 - -
Vium5419g00010 350 MobiDBLite consensus disorder prediction 326 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5419g00010 Vium-Chr5419 87994 90199 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5419g00010 2 350 Nodulin-like Gene Family AT3G28050 40.166 1.44e-79 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5419g00010 - - gmx:100804032 559.681