Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5419g00008 ATGGAGGCTAAGACTAAGATGTCTGAGTTGCTGCCATTCATAATGATGGTGATTATGGAAGGTTGGACCATAGGACTCACCATTTTTGCAAAAACTGCAATAACCAATGGAATGAGCCCATTTGTGTTCATAGTTTATACCAATGCTTTGGCCACTGTAATACTGTTCCCTTGTTCCTTTTTATCACACCAAGATGACAGAAAGGAGCGGCCAACTTTTACTTTCTCTTTGTTCATGCGATTCCTGTTCCTTGGCTTTATAGGGATAACCATGGCTCAGAGCTTTTTATTCCTGGGTCTAAGTTATAGTTCGCCAATACTTGTGTGTGCCATGGGACAATTGATTCCAACGTTTAACTTTCTTCTCTCTCTCATTCTCAGGAAGACAGAGCTGAATTTAAGAAGCACTGGTATCCAAGTCCAAGTAATTGGTATCTTGGTATCAATAATGGGAGCAGTGTTAGCTGAATTCTTCAAGGGACCACTTATAAGACCCTCTTCACACCACCTTAAACAAACCAACCAACTTCTTGTCTTCTCCTCAACACCAGAGTTTTGGCTTCTTGGTGGCGCTTTGCTTGCTACAGCTTTTTTCTCACTTTCACTTTCCAACTTCATCCAAAAAGAAACCGTCCAGCAATATCCAGAACCAATGAAGGTGGTTTCTTATTGTAGCTTAATTGGAACGATCCTCAGTGCAGTAGTGTCGTGTATTGTTGAGAGGGACATAATTGCTTGGAAGATAAAACGTAACAAGGATCTTATTCTCATTCTTCTAACTGCACTGGTAGGAGGTGTGATTCGTCCAAATATTCAAGTATGGTTAACCAGAATGAAGGGTCCACTTTATGTATCACTTTTCAAGCCCTTTGGTATTGCATTCGCCACTACTTTTGGACTTTGCTTCTTTTCTAACAGCCTTCATTATGGAAGTGTGATAGGAGCAACTTTACTTGGAATGGGGTATTATACAGTGATATATGGACAAATCAAAGGAAATGAAGAAGAGACAAGCTGTGACGATAGCTCTGATTCTTTGGACAAGAAGATACCTCTTCTGCAAGAAAAGATGGAAGCTAAGACTAAGATGTCTGAGTTGCTGCCGTTCATAATGATGGTGATTATGGAAGGTTGGACCATAGGACTCACCATTTTTGCAAAAACTGCAATAACCAATGGAATGAGCCCATTTGTGTTCATAGTTTATACCAATGCTTTGGCCACTATAATTCTGTTCCCTTGTTCCTTTTTATCGCACCAAGAGGACAGAAAGCAGCGGCTAACTTTTACTTTCTCTTTGTTCATGCGATTGTTGTTCATCGGTTTGATAGGGGTAACCATGACTCAGGCCTTTTTATTTCTGGGTCTAAGCTATAGTTCGCCAATACTTGTGTGTGCCATGAGCCACTTGATCCCAACGTTTAATTTTCTTCTCTCTCTCATTCTCAGGAAGACAGAGTTGAATCTGAGAAGCCCTGGTATCCAAGTCCAAGTGATTGGTGTGTTGGTATCAATAATGGGAGCAGTGGTAGCTGAATTCTACAAGGGACCACTTGTAAGACCTTCTTCTCACCACCTTAGACAAACTAAGCAACTTCTTCTCTTCTCCTCAACACCAGAATTTTGGCTTCTCGGTGGCGCTTTGCTTGCTGCAGCTTCCTTCTCCCTTTCAATTTCTAACTTTATCCAGAAAGAAACTCTAGAACAATATCCGGAACCAATGAAGGTGGTTTCTTATTCTAGCTTAATTGGAACGATCCTCAGTGCAACAGTGTCGTGTATTGTTGAGAGGGACATAAATGCTTGGAAGATAAAACGCAACAAGGATCTTATTCTCATTCTTCTAACTGCACTAGTAGGAGGTGTGATTCGTTCAAATGTTCAAGTATGGTTAACTCGCACGAAGGGTCCACTTTATGTACCACTTTTCAAGCCCTTTGGTATTGCATTTGCCACTACTTTTGCAGTTTGCTTCTTTTCTAACAGCCTTCATTATGGAAGCGTGGTAGGAACAACCATAGTTGGAATGGGGTATTATACAGTAATGTATGGACAAGTCAAAGGAAATGAAGAAGAGACAAGCTGTGACGATAGCTCAGATTCCTTGGACAAGAAGATACCTCTTCTGCAAGAAAAGATGCAAGTGTAA 2148 0.4088 MEAKTKMSELLPFIMMVIMEGWTIGLTIFAKTAITNGMSPFVFIVYTNALATVILFPCSFLSHQDDRKERPTFTFSLFMRFLFLGFIGITMAQSFLFLGLSYSSPILVCAMGQLIPTFNFLLSLILRKTELNLRSTGIQVQVIGILVSIMGAVLAEFFKGPLIRPSSHHLKQTNQLLVFSSTPEFWLLGGALLATAFFSLSLSNFIQKETVQQYPEPMKVVSYCSLIGTILSAVVSCIVERDIIAWKIKRNKDLILILLTALVGGVIRPNIQVWLTRMKGPLYVSLFKPFGIAFATTFGLCFFSNSLHYGSVIGATLLGMGYYTVIYGQIKGNEEETSCDDSSDSLDKKIPLLQEKMEAKTKMSELLPFIMMVIMEGWTIGLTIFAKTAITNGMSPFVFIVYTNALATIILFPCSFLSHQEDRKQRLTFTFSLFMRLLFIGLIGVTMTQAFLFLGLSYSSPILVCAMSHLIPTFNFLLSLILRKTELNLRSPGIQVQVIGVLVSIMGAVVAEFYKGPLVRPSSHHLRQTKQLLLFSSTPEFWLLGGALLAAASFSLSISNFIQKETLEQYPEPMKVVSYSSLIGTILSATVSCIVERDINAWKIKRNKDLILILLTALVGGVIRSNVQVWLTRTKGPLYVPLFKPFGIAFATTFAVCFFSNSLHYGSVVGTTIVGMGYYTVMYGQVKGNEEETSCDDSSDSLDKKIPLLQEKMQV 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5419g00008 715 Pfam EamA-like transporter family 378 510 IPR000620 GO:0016020
Vium5419g00008 715 Pfam EamA-like transporter family 545 682 IPR000620 GO:0016020
Vium5419g00008 715 Pfam EamA-like transporter family 22 154 IPR000620 GO:0016020
Vium5419g00008 715 PANTHER WAT1-RELATED PROTEIN 367 691 IPR030184 GO:0016020|GO:0022857
Vium5419g00008 715 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5419g00008 Vium-Chr5419 63156 70705 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5419g00008 357 715 Nodulin-like Gene Family AT1G70260 47.733 3.18e-115 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5419g00008 - - vum:124840741 1325.46