Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5419g00002 ATGGATAGGAGTTTTGAGGGGATTGAAGTTGTTACAATGAAAGGGAGTTGGTTAGTTGGGGTGTTGATTGTGTTGTTGGGCAGTGTTGGGGTAGAAGGGTACCCTTCTGAGGATCTGATAGAGAAGTTGCCTGGGCAACCTAATGTTGGATTCAAGCAATATGCAGGATATGTGGATGTAGACGTCAAACATGGAAGAAGCCTCTTCTACTATTTTGTGGAGGCTGAGAAAGACCATGAAAAGAAACCCCTCACTCTTTGGCTCAATGGAGGCCCAGGATGTTCCTCCATTGGAGGAGGTGCCTTTACTGAATTGGGTCCCTTTTATCCCAGAGGTGATGGACGTGGTCTTCGAAGAAATTCAATGTCTTGGAATAGAGCATCCAACCTCCTTTTCTTGGAGTCTCCAGCTGGAGTTGGTTGGTCATACTCAAACACAACTTCAGATTACAACGCTGGCGATGCATCCACAGCCAATGATACGCTTCTCTTCCTGCTGAAATGGTACGAGAAGTTTCCTTCTTACAGATCAAGGGAGCTGTTTCTTACCGGAGAAAGCTATGCAGGACATTATATACCACAGTTAGCCAATGTTCTTTTGGACCACAATACTCATTCAAATGGTTTCAAATTCAATATTAAAGGAGTAGCTATTGGAAACCCACTTCTGAAACTTGATCGTGATGCACGAGCAACATACGAATACTACTGGTCGCATGGACTGATCTCCGATGAAGTTGGCCTTGCCATTGCGAATGATTGCGATTTCGATGACTATGTCTTCGCTGATACACACAACGTGTCCAAATCATGCAACAATGCAATAAATGAGGCAAACGAGATTGTTAGCGATTACATAAACTACTATGATGTGATTCTGGATGTTTGTTATCCATCCATAGTTGAACAAGAACTGAAATTGAAAAAGATGGCTACTAAAATAAGCATAGGTGTAGATGTATGCATGACTTACGAAAGAGCATTTTATTTCAATCTCCCAGAGGTTCAGAAGGCTCTCCATGCAAACCGTACTAATCTTCCCTACCGCTGGTCCATGTGCAGTGGTGTCTTGAATTATAGCGAGACTGATCCTAATATAGACATCCTCCCTGTTCTCAAAAGGATAGTTCAAAACCATATTCCAGTATGGGTTTTCAGTGGAGACCAAGATTCTGTGGTGCCGTTACTAGGTTCTCGAACACTCATTCGTGAACTAGCTCACGAGCTAAAGTTCAAGATTACAGTCCCATATGGAGCATGGTTCCACCGAGGGCAGGTTGGAGGTTGGGTAACAGAGTATGGAAATTTGTTGACTTTTGCAACTGTAAGAGGAGCTGCTCACATGGTACCATTTGCACAGCCTTCAAGAGCACTCCATCTCTTTAGTTCTTTTGTGCATGGAAGGAGATTGCCAAACACTACAAGCCCTTCAATTTACGATTAA 1443 0.4317 MDRSFEGIEVVTMKGSWLVGVLIVLLGSVGVEGYPSEDLIEKLPGQPNVGFKQYAGYVDVDVKHGRSLFYYFVEAEKDHEKKPLTLWLNGGPGCSSIGGGAFTELGPFYPRGDGRGLRRNSMSWNRASNLLFLESPAGVGWSYSNTTSDYNAGDASTANDTLLFLLKWYEKFPSYRSRELFLTGESYAGHYIPQLANVLLDHNTHSNGFKFNIKGVAIGNPLLKLDRDARATYEYYWSHGLISDEVGLAIANDCDFDDYVFADTHNVSKSCNNAINEANEIVSDYINYYDVILDVCYPSIVEQELKLKKMATKISIGVDVCMTYERAFYFNLPEVQKALHANRTNLPYRWSMCSGVLNYSETDPNIDILPVLKRIVQNHIPVWVFSGDQDSVVPLLGSRTLIRELAHELKFKITVPYGAWFHRGQVGGWVTEYGNLLTFATVRGAAHMVPFAQPSRALHLFSSFVHGRRLPNTTSPSIYD 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5419g00002 480 Gene3D - 321 357 - -
Vium5419g00002 480 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 39 454 IPR001563 GO:0004185|GO:0006508
Vium5419g00002 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 143 IPR001563 GO:0004185|GO:0006508
Vium5419g00002 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185|GO:0006508
Vium5419g00002 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 437 450 IPR001563 GO:0004185|GO:0006508
Vium5419g00002 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 132 IPR001563 GO:0004185|GO:0006508
Vium5419g00002 480 Gene3D alpha/beta hydrolase 35 297 IPR029058 -
Vium5419g00002 480 FunFam Carboxypeptidase 368 467 - -
Vium5419g00002 480 SUPERFAMILY alpha/beta-Hydrolases 36 470 IPR029058 -
Vium5419g00002 480 ProSitePatterns Serine carboxypeptidases, serine active site. 182 189 IPR018202 GO:0004185
Vium5419g00002 480 FunFam Carboxypeptidase 34 298 - -
Vium5419g00002 480 Pfam Serine carboxypeptidase 45 467 IPR001563 GO:0004185|GO:0006508
Vium5419g00002 480 Gene3D - 368 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5419g00002 Vium-Chr5419 6447 9682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5419g00002 328 470 Calmodulin-binding Proteins AT2G22960 24.658 2.35e-10 58.2