Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5418g00010 ATGGCTGATTTAGGCTCAGCCTCTTCCAGGAGAATGTGGTGTTCCATTCCTGAAAGAATGCAGCTGCATGTGGCCATGCTGGCCTTGCAGTTTGGCTATGCTGGCTTCCATGTCGTCTCAAGAGCTGCCCTTAACATGGGTGTCAGCAAGCTTGTTTTCCCTGTCTATCGTAACATCATTGCCTTGCTTCTACTCCTTCCCTTTGCCTACTTCTTGGAAAAGAAGGAGAGGCCAGCTATCAGTTTAAACTTTGCCTGCCAGTTCTTTTTTCTGGCACTTGTTGGGATTACAGCAAACCAAGGTTTCTACTTGCTTGGGTTGGAGAACACATCTCCTACCTTCGCATCAGCAATACAGAACTCTGTCCCAGCAATTACATTCCTCATGGCAGCCATTTTCAGAATAGAGCAAGTGAGATTGAACAGAAAAGACGGGCTGGCAAAGGTGGTGGGAACCCTTTTGTGTGTAATTGGGGCCACTGTGATCACACTTTACAAAGGTCCAACAATATACAGCCCAGCAACCCGTGTGAACAGCATGAACAGCAACACAATAACAACACCAGTGTTTGATTTTGGAACACTCTCACTGGGAGATGCAAAGGGAAAGAACTGGACCCTGGGATGTTTGTACCTGATTGGACACTGCTTGTCTTGGTCTGGTTGGCTTGTGCTGCAAGCACCAGTTTTGAAGAAATACCCGGCTCGTCTCTCTTTCACTTCCTACACCTGTTTCTTTGGCCTCTTGCAGTTCCTGGTCATTGCTTTGGTCCTTGAAAGAGATGCACAGGCTTGGCTTTTCCACTCTGGTGGAGAAGCTTTCACAATTTTATATGCGGGAGTGGTGGCATCTGGAATTGCCTTCGCTGTTCAGACATGGTGCGTCGACAGAGGTGGCCCTGTGTTCGTTGCAGTGTATCAACCTGTTCAAACTCTCGTTGTCGCTATTATGGCTTCCCTTGCTTTAGGCGAAGAGTTCTACTTGGGAGGGATCATTGGGGCAGTGTTGATTGTAGCGGGACTATACTTTGTTTTGTGGGGTAAAAGTGAAGAGAGGAAATTTGCTAGAGAACAGCTTGCTATTGCATCCACTACTGATCATAGCATCATAAGGCCTGCAAGCCACGCCAAAGCATCACTTGCTCAGCCACTTCTTTCTTCATCAACAGAGAATGTTTGA 1179 0.4716 MADLGSASSRRMWCSIPERMQLHVAMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIALLLLLPFAYFLEKKERPAISLNFACQFFFLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAAIFRIEQVRLNRKDGLAKVVGTLLCVIGATVITLYKGPTIYSPATRVNSMNSNTITTPVFDFGTLSLGDAKGKNWTLGCLYLIGHCLSWSGWLVLQAPVLKKYPARLSFTSYTCFFGLLQFLVIALVLERDAQAWLFHSGGEAFTILYAGVVASGIAFAVQTWCVDRGGPVFVAVYQPVQTLVVAIMASLALGEEFYLGGIIGAVLIVAGLYFVLWGKSEERKFAREQLAIASTTDHSIIRPASHAKASLAQPLLSSSTENV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5418g00010 392 Pfam EamA-like transporter family 207 345 IPR000620 GO:0016020
Vium5418g00010 392 Pfam EamA-like transporter family 26 163 IPR000620 GO:0016020
Vium5418g00010 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
Vium5418g00010 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 350 - -
Vium5418g00010 392 PANTHER WAT1-RELATED PROTEIN 24 357 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5418g00010 Vium-Chr5418 37424 40822 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5418g00010 1 392 Nodulin-like Gene Family AT1G75500 73.434 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5418g00010 - - gmx:100792395 691.419