Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5418g00006 ATGTCTATGGCGGCGGTGGTGGAGGCGAGGAAGGCCCCGCGGCCGGGAAAGGGCGGTTACGAAGCGCACGGCCTGAGCGAGGAAGAAGCGCGTGTTCGAGCAATCGCGGAGATCGTGAACTCCATGGTAGACCTCTCCCACAAGGGCCATAACGTGGACCTCAACGCCCTAAAGTCTGCAGCGTGCCGCAAGTACGGCCTCGCACGCGCGCCTAAGCTCGTGGAGATGATAGCCGCGCTCCCCGATGCGGAGCGCGAAACTCTCCTCCCCAAGCTCCGTGCCAAACCCGTCCGCACCGCCTCCGGAATCGCCGTAGTTGCCGTCATGTCCAAACCGCACCGCTGCCCGCACATCGCCACCACCGGGAACATCTGCGTTTACTGCCCTGGCGGTCCCGACTCCGACTTCGAGTACAGTACTCAGTCCTACACCGGTTACGAACCAACCAGCATGCGCGCGATTCGTGCGAGGTATAATCCATATGTTCAGGCAAGGAGCAGGATAGATCAGCTTAAGCGTTTGGGTCATAGCGTAGACAAGGTTGAGTTTATCTTAATGGGTGGTACCTTCATGTCTCTTCCAGCTGATTACCGTGATTACTTTATAAGAAATCTTCACGATGCTTTGTCTGGGCATACTTCTGTCAATGTGGAAGAGGCAGTAGCTTACTCTGAGCATGGAGCAACCAAATGTATTGGCATGACAATTGAAACGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGCCAAATGCTTTCTTATGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACCTATGAGGATGTTGCCCGAGACACAAACAGAGGACACACTGTAGCTGCTGTAGCTGATTGCTTTTCCTTGGCTAAAGATGCTGGTTTCAAGGTTGTTGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAGAGGGACATGGAAAGTTTTCGGGAGTTTTTTGAGAGCCCCTTGTTTAGAGCAGATGGGCTTAAAATATATCCTACACTTGTAATTCGTGGAACAGGGCTTTATGAGCTCTGGAAAACTGGCAGGTATAGAAATTATCCACCAGAGCAACTTGTGGACATCATAGCAAGGATCCTTGCAATGGTACCACCATGGACACGTGTTTATAGAGTTCAGCGGGATATTCCTATGCCTTTGGTTACCTCCGGGGTTGAGAAAGGGAATTTGAGGGAGCTAGCATTAGCTCGAATGGAAGACTTGGGATTGAAATGTCGTGATGTTCGGACCAGGGAAGCTGGAATCCAGGATATTCACCACCAAATTAGGCCAGAGGAGGTGGAGCTTGTTCGGCGTGATTATATGGCAAATGAGGGTTGGGAAACATTTCTATCATATGAAGATACACGACAAGATATCCTTGTTGGTTTGTTGCGTCTGCGAAAATGTGGCCGCAATACTACATGTCCAGAGCTTATGGGGAAGTGTTCAATTGTTCGTGAACTCCATGTTTATGGGACTGCCGTACCAGTTCATGGACGGGATGCTGACAAGCTACAACACCAGGGTTATGGTACACTTTTAATGGAGGAGGCAGAGCGTATTGCTTGCAGAGAACACAGATCAACAAAAATAGCTGTAATTTCAGGGGTGGGCACACGCCATTATTACAGGAAACTGGGATATGAGCTTGAAGGACCTTACATGGTGAAATATTTAGCGAAATAA 1695 0.4985 MSMAAVVEARKAPRPGKGGYEAHGLSEEEARVRAIAEIVNSMVDLSHKGHNVDLNALKSAACRKYGLARAPKLVEMIAALPDAERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSVNVEEAVAYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFSLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIRPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIACREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLAK 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5418g00006 564 ProSiteProfiles Radical SAM core domain profile. 98 388 IPR007197 GO:0003824|GO:0051536
Vium5418g00006 564 SUPERFAMILY Radical SAM enzymes 135 374 - -
Vium5418g00006 564 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 412 564 IPR000182 GO:0016747
Vium5418g00006 564 PIRSF HAT_Elp3 20 563 IPR034687 -
Vium5418g00006 564 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 16 562 IPR039661 -
Vium5418g00006 564 Pfam Acetyltransferase (GNAT) family 415 551 IPR000182 GO:0016747
Vium5418g00006 564 Pfam Radical_SAM C-terminal domain 329 408 IPR032432 -
Vium5418g00006 564 Pfam Radical SAM superfamily 123 311 IPR007197 GO:0003824|GO:0051536
Vium5418g00006 564 NCBIfam tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 50 562 IPR034687 -
Vium5418g00006 564 MobiDBLite consensus disorder prediction 1 24 - -
Vium5418g00006 564 FunFam Elongator complex protein 3 411 563 - -
Vium5418g00006 564 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 371 558 IPR016181 -
Vium5418g00006 564 SMART MiaB 105 367 IPR006638 GO:0003824|GO:0051536
Vium5418g00006 564 CDD Radical_SAM 112 359 - -
Vium5418g00006 564 SFLD elongater protein-like 53 562 - -
Vium5418g00006 564 SFLD ELP3-like 53 562 IPR034687 -
Vium5418g00006 564 Gene3D - 414 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5418g00006 Vium-Chr5418 25202 30389 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vium5418g00006 Radical_SAM 4.4e-18 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5418g00006 K07739 - gmx:100818764 1119.38