Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5418g00005 ATGCTGACATCAGGCATGAGAATGAATGCTAGTAAGCAGGTGAAAAAATCTGCAAAAGCGAGTTCCAGAAAGGGGTGTATGAGAGGCAAAGGAGGCCCTGAGAATGCCAGTTGCACCTTCAAAGGTGTGAGGCAGAGAACTTGGGGAAAATGGGTGGCTGAGATCCGTGAGCCTAACCGTGGTGCACGCCTCTGGCTTGGCACATATGAGACCTCTGTAGAGGCTGCCATGGCTTATGATTGTGCAGCACGTAAGCTCTACGGATCTGATGCAAAACTCAACCTCCCAGACCTTGCTATGGCCTTGGCCTTTAATTTCCAGTTTCCACCACCAAGCCCTCAGATCCCTCACATGCAACCATCACCACAGCTTCAACACTCTCAGATTCCCTCTCCCTATGACATTTTCAATCTCCCCTCCTTTGATTTCATCAACAACCTCACCGATGACACCAACATCATGTTCAACCCTGTGCTCTCCATGCCTCCTCAACATGCAATTGCTGATTCTGCGCCAGTGTACGCCAGCGACTCTCATGTCGCAATTCCCTATGAAAACACCACCATCCCCATGGCGATTCACCCCTCCAACCCCTTGGAGATCAACGAGGACACTGTTGATCCTTTTGGGGGGTCTTTCAATGACATTCCTGACCCTATGTTTGATGATTCCATCTGGGCTGAAGCTGCTAGGTCTCTTGATTTCCCTCTGATACCAGATGCTGCAGGAATTAATGAAGTTGAAACCTTTCTTGAAGTGGGTCCTTGGGACTCTCTGCAAACTCCCTGA 789 0.4956 MLTSGMRMNASKQVKKSAKASSRKGCMRGKGGPENASCTFKGVRQRTWGKWVAEIREPNRGARLWLGTYETSVEAAMAYDCAARKLYGSDAKLNLPDLAMALAFNFQFPPPSPQIPHMQPSPQLQHSQIPSPYDIFNLPSFDFINNLTDDTNIMFNPVLSMPPQHAIADSAPVYASDSHVAIPYENTTIPMAIHPSNPLEINEDTVDPFGGSFNDIPDPMFDDSIWAEAARSLDFPLIPDAAGINEVETFLEVGPWDSLQTP 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5418g00005 262 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Vium5418g00005 262 MobiDBLite consensus disorder prediction 1 33 - -
Vium5418g00005 262 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Vium5418g00005 262 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 13 162 - -
Vium5418g00005 262 MobiDBLite consensus disorder prediction 1 16 - -
Vium5418g00005 262 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Vium5418g00005 262 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Vium5418g00005 262 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Vium5418g00005 262 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Vium5418g00005 262 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Vium5418g00005 262 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Vium5418g00005 262 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5418g00005 Vium-Chr5418 16973 18138 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5418g00005 8 97 AP2-EREBP Transcription Factor Family AT1G75490 75.556 2.03e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium5418g00005 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5418g00005 - - pvu:PHAVU_001G010400g 363.614