Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5418g00003 ATGGAAAACCATCATAAACACAACAAGTTAACAATGTTACGCGTTTTATTTTTCTGCATCTTCTCCACGTTCCTATTATCTATACAAGGCACCCTTACTCTCACTCCAAATGAATCAATCCAAGGCAACACGACCATGGTTTCTTCTGCTGGAACTTTTGAAGCTGGATTCTTTCAGTTTGGAAATTCACAAGATCAATACTTTTGTATATGGTACAAGAACATATCACCAAAGACTATTGTGTGGGTGGCCAACAGAGATGCCCCAGTGAAAAACTCAACAGCCTTTTTCACACTAACAGAACAAGGAGTTCCTGTTATTCTTGATGCCTCAGGAAGTGTTGTGTGGACCTCCAATTCATCAAGAACCGCTAAGAAACCAGTTATGCAGCTTCTAGACTCGGGAAATCTTGTTGTGCAAGATGGAGACAGCACAAAAGACCTTTTGTGGGAAAGTTTTGATTACCCTGGTGACACTTTCCTTGCAGGAATGAAACTTCGTACAAACTTTGTGACTGGTCCTTTTAGGTTTCTCACATCTTGGAGAAACGCAGAAGATCCTGGCTCTGGTGAGTTTTCATATCACATAGATGCTCATGGCTATCCTCAACTGGTTACTACAAAGGGAGAACTTTTGTTCAGTAGAGGAGGGCCATGGAACGGCAATGTTTTCAGTGGAGTTTCATGGAGAAGAACGCTTAGACTCGTAAAGTTTTCGCTTGAGAGTAACGGCAAGGAAGTCATTTACCAATATAAGACCTTAGAGGCTGAAACTATTACAAGGTTAGTGATCAACCCAGCTGGTCTTGTGCAACGTTTGTTATGGTCGGGTGGCAGCCGGGGTTGGGAGATTTTATCCACTCGTCCCATGGATCAGTGTGACTATTATTCCTTTTGTGATGTGAATTCACTGTGTAATGTTACTAACTCTCCAAAAATATGTACATGTTTAGAAGGCTTTGTACCAAAGTTCTATGAGAGATGGAGTTCACTGGATTGGTCTGGTGGGTGTGTCAGAAGAGTAAATTTGAGTTGTGATGGTGATAGGTTTCGGAAGTACACTGGAATGAAGTTTCCAGACACTTCTTCTTCTTGGTATAACGACAGTTTGAGCCTCGAGAAGTGTGAGGATTTGTGTTTGAAAGACTGTTCTTGCACAGCATTTGCAAATATAAATGCCAGTGGGAGAGGGTGCTTGCTTTGGTTTGGTGACATTACTGATTTGAGCAGACACACAGACCAAGGACAAGATATTTACATGAGACTTGAAGCTTCAGAGTTAGATCATGGAGGGAGTAATCAGAGCTTCAATAGCAAGAATATCACAGGGATAATAGTAGGTATTGTTTTCTTGGTCGTGGTGCTTGGATTGGCCACATTCACATATATGAAGAGGAAGAAGCTGGCGAAGAGTGAGGTGCTAAAAATATTTCATTGGAAGTTCAAAAGGGAGAAGGAAGATGTGGAGCTATCAAAAATATTTGATTTTTCAACCATCTCTGCTGCTACCAATAACTTTTCACCCAGTAACATATTAGGAGAAGGTGGCTTCGGGCCAGTGTACAAGGGTATACTGAAAGATGGGCAAGATATTGCAGTGAAGAGGCTTGCAAAAACTTCTGAACAAGGAGCAGAGCAATTCAAGAATGAAGTCATGTTAATGGCAAAACTTCAACATCGCAATCTTGTAAAACTTCACGGTTGTTCTATTCACCAAGAAGAAAGGCTTTTGATCTATGAATACATGCCCAACAGAAGCTTGGATTACTTCATTTTTGATTCAACGCAAAGTAAACAACTGGGTTTGACAAAGCGCCTTCAAATTATTGATGGTATAGCACGAGGGCTACTCTATCTTCACCAAGACTCTAGATTGAGAATCATCCACAGAGATCTCAAAGCCAGCAATATTCTTCTAGACAACGATATGAATCCAAAGATATCGGATTTTGGTTTGGCTAGAACATTTGGTGGAGATCAAGCTGAGGCAAATACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCTGAATATGCTCTCCATGGACATTTCTCAATCAAATCTGATGTATTTAGCTTTTGTGTGATGGTAATGGAGATAATCAGTGGGAAAAAGAATCGCAATTTTCATGACTCTGAGCATCAGCTTAATCTTCTTAGTCATGCATGGAGATTGTGGACTGAAGACAAGCCACTGGAGCTAATAGATGAGGTATTAGATTATCCAACCACACCATTTGAAATACTTAGATGCATTCATGTGGGTCTATTATGTGTACAACAAACACCACAAAACAGACCAAACATGTCCTCTGTGGTTTTGATGTTGAATGGTGAAAAGGTATTGCCTGAGCCAAGTCCACCTGGGTTCTACACAGGCACAACTACTCAGTTTCCCATTCAGGCAGAATCTTCTTCGAGAAGTTGTGGAGATAGAACACAAAATGAAGTTACAGTGTCCTTGTTACAGCCACGATAG 2481 0.4079 MENHHKHNKLTMLRVLFFCIFSTFLLSIQGTLTLTPNESIQGNTTMVSSAGTFEAGFFQFGNSQDQYFCIWYKNISPKTIVWVANRDAPVKNSTAFFTLTEQGVPVILDASGSVVWTSNSSRTAKKPVMQLLDSGNLVVQDGDSTKDLLWESFDYPGDTFLAGMKLRTNFVTGPFRFLTSWRNAEDPGSGEFSYHIDAHGYPQLVTTKGELLFSRGGPWNGNVFSGVSWRRTLRLVKFSLESNGKEVIYQYKTLEAETITRLVINPAGLVQRLLWSGGSRGWEILSTRPMDQCDYYSFCDVNSLCNVTNSPKICTCLEGFVPKFYERWSSLDWSGGCVRRVNLSCDGDRFRKYTGMKFPDTSSSWYNDSLSLEKCEDLCLKDCSCTAFANINASGRGCLLWFGDITDLSRHTDQGQDIYMRLEASELDHGGSNQSFNSKNITGIIVGIVFLVVVLGLATFTYMKRKKLAKSEVLKIFHWKFKREKEDVELSKIFDFSTISAATNNFSPSNILGEGGFGPVYKGILKDGQDIAVKRLAKTSEQGAEQFKNEVMLMAKLQHRNLVKLHGCSIHQEERLLIYEYMPNRSLDYFIFDSTQSKQLGLTKRLQIIDGIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLARTFGGDQAEANTNRVMGTYGYMPPEYALHGHFSIKSDVFSFCVMVMEIISGKKNRNFHDSEHQLNLLSHAWRLWTEDKPLELIDEVLDYPTTPFEILRCIHVGLLCVQQTPQNRPNMSSVVLMLNGEKVLPEPSPPGFYTGTTTQFPIQAESSSRSCGDRTQNEVTVSLLQPR 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5418g00003 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 153 - -
Vium5418g00003 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Vium5418g00003 826 Pfam PAN-like domain 345 408 IPR003609 -
Vium5418g00003 826 Gene3D Transferase(Phosphotransferase) domain 1 582 783 - -
Vium5418g00003 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 785 - -
Vium5418g00003 826 MobiDBLite consensus disorder prediction 804 826 - -
Vium5418g00003 826 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 469 581 - -
Vium5418g00003 826 PIRSF SRK 4 826 IPR024171 GO:0004674
Vium5418g00003 826 CDD B_lectin 37 156 IPR001480 -
Vium5418g00003 826 SMART blect_4 37 156 IPR001480 -
Vium5418g00003 826 Pfam S-locus glycoprotein domain 215 324 IPR000858 GO:0048544
Vium5418g00003 826 Pfam Protein tyrosine and serine/threonine kinase 510 774 IPR001245 GO:0004672|GO:0006468
Vium5418g00003 826 CDD TM_EGFR-like 441 470 - -
Vium5418g00003 826 SMART ntp_6 345 422 IPR003609 -
Vium5418g00003 826 SUPERFAMILY Protein kinase-like (PK-like) 491 795 IPR011009 -
Vium5418g00003 826 Gene3D Phosphorylase Kinase; domain 1 480 581 - -
Vium5418g00003 826 CDD STKc_IRAK 512 779 - -
Vium5418g00003 826 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 768 - -
Vium5418g00003 826 ProSiteProfiles Bulb-type lectin domain profile. 31 152 IPR001480 -
Vium5418g00003 826 Gene3D - 28 153 IPR036426 -
Vium5418g00003 826 SMART serkin_6 506 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5418g00003 826 CDD PAN_AP_plant 341 422 - -
Vium5418g00003 826 ProSiteProfiles PAN/Apple domain profile. 345 423 IPR003609 -
Vium5418g00003 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 187 IPR036426 -
Vium5418g00003 826 Pfam D-mannose binding lectin 79 182 IPR001480 -
Vium5418g00003 826 ProSiteProfiles Protein kinase domain profile. 506 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5418g00003 Vium-Chr5418 5112 8887 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5418g00003 434 791 Receptor kinase-like Gene Family AT4G23230 51.944 1.13e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium5418g00003 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5418g00003 - - var:108337036 1643.25