Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5418g00002 ATGGAAAACCATCATAAACACAACAAGTTAACAATGTTACGCGTTTTATTTTTCTGCATCTTCTCCACGTTCCTATTATCTATACAAGGCACCCTTACTCTCACTCCAAATGAATCAATCCAAGGCAACACGACCATGGTTTCTTCTGCTGGAACTTTTGAAGCTGGATTCTTTCAGTTTGGAAATTCACAAGATCAATACTTTTGTATATGGTACAAGAACATATCACCAAAGACTATTGTGTGGGTGGCCAACAGAGATGCCCCAGTGAAAAACTCAACAGCCTTTTTCACACTAACAGAACAAGGAGTTCCTGTTATTCTTGATGCCTCAGGAAGTGTTGTGTGGACCTCCAATTCATCAAGAACCGCTAAGAAACCAGTTATGCAGCTTCTAGACTCGGGAAATCTTGTTGTGCAAGATGGAGACAGCACAAAAGACCTTTTGTGGGAAAGTTTTGATTACCCTGGTGACACTTTCCTTGCAGGAATGAAACTTCGTACAAACTTTGTGACTGGTCCTTTTAGGTTTCTCACATCTTGGAGAAACGCAGAAGATCCTGGCTCTGGTGAGTTTTCATATCACATAGATGCTCATGGCTATCCTCAACTGGTTACTACAAAGGGAGAACTTTTGTTCAGTAGAGGAGGGCCATGGAACGGCAATGTTTTCAGTGGAGTTTCATGGAGAAGAACGCTTAGACTCGTAAAGTTTTCGCTTGAGAGTAACGGCAAGGAAGTCATTTACCAATATAAGACCTTAGAGGCTGAAACTATTACAAGGTTAGTGATCAACCCAGCTGGTCTTGTGCAACGTTTGTTATGGTCGGGTGGCAGCCGGGGTTGGGAGATTTTATCCACTCGTCCCATGGATCAGTGTGACTATTATTCCTTTTGTGATGTGAATTCACTGTGTAATGTTACTAACTCTCCAAAAATATGTACATGTTTAGAAGGCTTTGTACCAAAGTTCTATGAGAGATGGAGTTCACTGGATTGGTCTGGTGGGTGTGTCAGAAGAGTAAATTTGAGTTGTGATGGTGATAGGTTTCGGAAGTACACTGGAATGAAGTTTCCAGACACTTCTTCTTCTTGGTATAACGACAGTTTGAGCCTCGAGAAGTGTGAGGATTTGTGTTTGAAAGACTGTTCTTGCACAGCATTTGCAAATATAAATGCCAGTGGGAGAGGGTGCTTGCTTTGGTTTGGTGACATTACTGATTTGAGCAGACACACAGACCAAGGACAAGATATTTACATGAGACTTGAAGCTTCAGAGTTAGTTTATTCCTCAGATCATGGAGGGAGTAATCAGAGCTTCAATAGCAAGAATATCACAGGGATAATAGTAGGTATTGTTTTCTTGGTCGTGGTGCTTGGATTGGCCACATTCACATATATGAAGAGGAAGAAGCTGGCGAAGAGTGAGGTGCTAAAAATATTTCATTGGAAGTTCAAAAGGGAGAAGGAAGATGTGGAGCTATCAAAAATATTTGATTTTTCAACCATCTCTGCTGCTACCAATAACTTTTCACCCAGTAACATATTAGGAGAAGGTGGCTTCGGGCCAGTGTACAAGGGTATACTGAAAGATGGGCAAGATATTGCAGTGAAGAGGCTTGCAAAAACTTCTGAACAAGGAGCAGAGCAATTCAAGAATGAAGTCATGTTAATGGCAAAACTTCAACATCGCAATCTTGTAAAACTTCACGGTTGTTCTATTCACCAAGAAGAAAGGCTTTTGATCTATGAATACATGCCCAACAGAAGCTTGGATTACTTCATTTTTGATTCAACGCAAAGTAAACAACTGGGTTTGACAAAGCGCCTTCAAATTATTGATGGTATAGCACGAGGGCTACTCTATCTTCACCAAGACTCTAGATTGAGAATCATCCACAGAGATCTCAAAGCCAGCAATATTCTTCTAGACAACGATATGAATCCAAAGATATCGGATTTTGGTTTGGCTAGAACATTTGGTGGAGATCAAGCTGAGGCAAATACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCTGAATATGCTCTCCATGGACATTTCTCAATCAAATCTGATGTATTTAGCTTTTGTGTGATGGTAATGGAGATAATCAGTGGGAAAAAGAATCGCAATTTTCATGACTCTGAGCATCAGCTTAATCTTCTTAGTCATGCATGGAGATTGTGGACTGAAGACAAGCCACTGGAGCTAATAGATGAGGTATTAGATTATCCAACCACACCATTTGAAATACTTAGATGCATTCATGTGGGTCTATTATGTGTACAACAAACACCACAAAACAGACCAAACATGTCCTCTGTGGTTTTGATGTTGAATGGTGAAAAGGTATTGCCTGAGCCAAGTCCACCTGGGTTCTACACAGGCACAACTACTCAGTTTCCCATTCAGGCAGAATCTTCTTCGAGAAGTTGTGGAGATAGAACACAAAATGAAGTTACAGTGTCCTTGTTACAGCCACGATAG 2493 0.4075 MENHHKHNKLTMLRVLFFCIFSTFLLSIQGTLTLTPNESIQGNTTMVSSAGTFEAGFFQFGNSQDQYFCIWYKNISPKTIVWVANRDAPVKNSTAFFTLTEQGVPVILDASGSVVWTSNSSRTAKKPVMQLLDSGNLVVQDGDSTKDLLWESFDYPGDTFLAGMKLRTNFVTGPFRFLTSWRNAEDPGSGEFSYHIDAHGYPQLVTTKGELLFSRGGPWNGNVFSGVSWRRTLRLVKFSLESNGKEVIYQYKTLEAETITRLVINPAGLVQRLLWSGGSRGWEILSTRPMDQCDYYSFCDVNSLCNVTNSPKICTCLEGFVPKFYERWSSLDWSGGCVRRVNLSCDGDRFRKYTGMKFPDTSSSWYNDSLSLEKCEDLCLKDCSCTAFANINASGRGCLLWFGDITDLSRHTDQGQDIYMRLEASELVYSSDHGGSNQSFNSKNITGIIVGIVFLVVVLGLATFTYMKRKKLAKSEVLKIFHWKFKREKEDVELSKIFDFSTISAATNNFSPSNILGEGGFGPVYKGILKDGQDIAVKRLAKTSEQGAEQFKNEVMLMAKLQHRNLVKLHGCSIHQEERLLIYEYMPNRSLDYFIFDSTQSKQLGLTKRLQIIDGIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLARTFGGDQAEANTNRVMGTYGYMPPEYALHGHFSIKSDVFSFCVMVMEIISGKKNRNFHDSEHQLNLLSHAWRLWTEDKPLELIDEVLDYPTTPFEILRCIHVGLLCVQQTPQNRPNMSSVVLMLNGEKVLPEPSPPGFYTGTTTQFPIQAESSSRSCGDRTQNEVTVSLLQPR 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5418g00002 830 CDD STKc_IRAK 516 783 - -
Vium5418g00002 830 Pfam D-mannose binding lectin 79 182 IPR001480 -
Vium5418g00002 830 CDD TM_EGFR-like 445 474 - -
Vium5418g00002 830 PIRSF SRK 4 830 IPR024171 GO:0004674
Vium5418g00002 830 Pfam PAN-like domain 345 408 IPR003609 -
Vium5418g00002 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 153 - -
Vium5418g00002 830 CDD B_lectin 37 156 IPR001480 -
Vium5418g00002 830 SMART blect_4 37 156 IPR001480 -
Vium5418g00002 830 Pfam S-locus glycoprotein domain 215 324 IPR000858 GO:0048544
Vium5418g00002 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 473 585 - -
Vium5418g00002 830 SUPERFAMILY Protein kinase-like (PK-like) 495 799 IPR011009 -
Vium5418g00002 830 SMART ntp_6 345 422 IPR003609 -
Vium5418g00002 830 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 772 - -
Vium5418g00002 830 Gene3D Phosphorylase Kinase; domain 1 484 585 - -
Vium5418g00002 830 Gene3D Transferase(Phosphotransferase) domain 1 586 787 - -
Vium5418g00002 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 586 789 - -
Vium5418g00002 830 MobiDBLite consensus disorder prediction 808 830 - -
Vium5418g00002 830 ProSiteProfiles Bulb-type lectin domain profile. 31 152 IPR001480 -
Vium5418g00002 830 SMART serkin_6 510 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5418g00002 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Vium5418g00002 830 Gene3D - 28 153 IPR036426 -
Vium5418g00002 830 CDD PAN_AP_plant 341 422 - -
Vium5418g00002 830 ProSiteProfiles PAN/Apple domain profile. 345 423 IPR003609 -
Vium5418g00002 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 187 IPR036426 -
Vium5418g00002 830 Pfam Protein tyrosine and serine/threonine kinase 514 778 IPR001245 GO:0004672|GO:0006468
Vium5418g00002 830 ProSiteProfiles Protein kinase domain profile. 510 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5418g00002 Vium-Chr5418 5112 8887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5418g00002 438 795 Receptor kinase-like Gene Family AT4G23230 51.944 9.68e-126 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium5418g00002 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5418g00002 - - var:108337036 1656.34