Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5417g00003 ATGGAGAGAAAGTTTTGGGGGTTTGTTTTCTTCTGGTGGGTGCTCTTAGCTCACCCATTGTGCTTGGTTTCTGCTAACATGGAAGGTGACGCCTTACATAATCTGAGGACAAATTTACAGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACATTGGTGAATCCATGCACGTGGTTTCATGTAACATGCAACAATGATAATAGTGTCATTAGAGTTGATCTGGGAAATGCTGCTTTGTCTGGTCAACTTGTTCCACAGCTTGGCCAACTTAAAAACTTACAGTATTTGGAACTTTACAGCAATAACATTAGTGGACCAATTCCAAGTGATCTGGGAAATCTTACTAATTTGGTGAGCTTGGATTTGTATCTGAACCGCTTCAGTGGACCTATCCCAGAGTCATTGGGCAAATTGTCAAAATTGCGCTTCCTCCGGCTTAACAACAACAGCCTTACTGGTCCTATTCCCATGTCACTGACTAATGTCACTGCTTTGCAAGTGCTGGATTTGTCTAATAACCGTCTCTCAGGTGTGGTTCCTGATAATGGCTCCTTCTCACTATTCACTCCCATCAGTTTTACCAACAACTTGGACTTATGTGGCCCAGTCACTGGGCACCCTTGTCCTGGGTCACCACCATTTTCTCCTCCTCCTCCTTTTGTCCCACCATCCCCGATCTCAGGTCCAGGAGGAAATAGTGCCACTGGTGCAATAGCTGGAGGAGTAGCTGCAGGTGCTGCTCTGTTATTTGCTGCTCCAGCAATTGCATTTGCATGGTGGCGTCGAAGGAAACCACAAGAATTTTTCTTTGATGTACCTGCTGAAGAAGATCCAGAAGTACACCTTGGGCAGCTCAAGAGGTTCTCACTCCGGGAACTGCAAGTTGCAACAGATACTTTTAGTAATAAAAACATTCTTGGAAGGGGAGGATTTGGTAAGGTGTACAAAGGACGCTTGGCAGATGGTTCACTGGTTGCTGTGAAAAGATTGAAAGAGGAGCGCACACCTGGTGGGGAACTTCAGTTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTGCACCGAAATCTCCTCCGTTTACGTGGGTTCTGTATGACACCAACAGAAAGACTACTTGTATATCCTTACATGGCTAATGGAAGTGTTGCCTCATGCTTAAGAGAGCGTCCAGCACATCAACAACCCCTTGATTGGCCAACAAGAAAAAGAATAGCATTGGGATCATCAAGAGGTCTTTCATATTTGCATGATCACTGTGATCCAAAGATTATCCACCGTGATGTAAAAGCTGCAAACATATTGTTGGATGAGGAGTTTGAGGCTGTTGTTGGGGATTTTGGGTTGGCTAAACTGATGGACTACAAGGACACCCATGTTACGACTGCTGTACGTGGCACAATTGGGCACATAGCCCCAGAGTACTTATCTACTGGTAAATCTTCAGAGAAAACTGACGTATTTGGTTATGGTATAATGCTTCTGGAGCTGATCACTGGACAAAGGGCTTTTGACTTAGCTCGACTTGCGAATGATGATGATGTTATGTTGCTGGATTGGGTTAAAGGACTTTTGAAGGAAAAGAAGCTAGAAATGCTTGTGGACCCTGATCTCCATAGCAATTACATAGATGCTGAGGTGGAACAGTTAATTCAGGTTGCACTGCTTTGCACACAAGGTTTCCCTATGGACCGGCCTAAGATGTCAGAAGTGGTGCGAATGCTTGACGGTGACGGTTTGGCCGATAGATGGGACGAGTGGCAAAAGGTGGAGGTTCTGCGCCAGGAAGTGGATCTCACCCCTCATTCCAATTCTGATTGGATTGTTGACTCAACTGAAAATCTACATGCAGTTGAGTTATCTGGTCCAAGGTAA 1875 0.4501 MERKFWGFVFFWWVLLAHPLCLVSANMEGDALHNLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYSNNISGPIPSDLGNLTNLVSLDLYLNRFSGPIPESLGKLSKLRFLRLNNNSLTGPIPMSLTNVTALQVLDLSNNRLSGVVPDNGSFSLFTPISFTNNLDLCGPVTGHPCPGSPPFSPPPPFVPPSPISGPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPAHQQPLDWPTRKRIALGSSRGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLHSNYIDAEVEQLIQVALLCTQGFPMDRPKMSEVVRMLDGDGLADRWDEWQKVEVLRQEVDLTPHSNSDWIVDSTENLHAVELSGPR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5417g00003 624 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Vium5417g00003 624 FunFam Somatic embryogenesis receptor-like kinase 1 378 595 - -
Vium5417g00003 624 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Vium5417g00003 624 Pfam Protein kinase domain 302 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5417g00003 624 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Vium5417g00003 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Vium5417g00003 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 585 - -
Vium5417g00003 624 SUPERFAMILY Protein kinase-like (PK-like) 280 575 IPR011009 -
Vium5417g00003 624 SUPERFAMILY L domain-like 28 192 - -
Vium5417g00003 624 Gene3D Transferase(Phosphotransferase) domain 1 378 595 - -
Vium5417g00003 624 FunFam Somatic embryogenesis receptor kinase 1 270 377 - -
Vium5417g00003 624 FunFam Somatic embryogenesis receptor kinase 1 24 211 - -
Vium5417g00003 624 Gene3D Ribonuclease Inhibitor 24 211 IPR032675 -
Vium5417g00003 624 ProSiteProfiles Protein kinase domain profile. 301 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5417g00003 624 SMART serkin_6 301 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5417g00003 Vium-Chr5417 1123 12559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5417g00003 1 624 Receptor kinase-like Gene Family AT1G71830 88.160 0.0 1040
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vium5417g00003 Pkinase 5.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5417g00003 K13418 - gmx:100813918 1110.52