Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5417g00002 ATGGAGAGAAAGTTTTGGGGGTTTGTTTTCTTCTGGTGGGTGCTCTTAGCTCACCCATTGTGCTTGGTTTCTGCTAACATGGAAGGTGACGCCTTACATAATCTGAGGACAAATTTACAGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACATTGGTGAATCCATGCACGTGGTTTCATGTAACATGCAACAATGATAATAGTGTCATTAGAGTGGAACTTTACAGCAATAACATTAGTGGACCAATTCCAAGTGATCTGGGAAATCTTACTAATTTGGTGAGCTTGGATTTGTATCTGAACCGCTTCAGTGGACCTATCCCAGAGTCATTGGGCAAATTGTCAAAATTGCGCTTCCTCCGGCTTAACAACAACAGCCTTACTGGTCCTATTCCCATGTCACTGACTAATGTCACTGCTTTGCAAGTGCTGGATTTGTCTAATAACCGTCTCTCAGGTGTGGTTCCTGATAATGGCTCCTTCTCACTATTCACTCCCATCAGTTTTACCAACAACTTGGACTTATGTGGCCCAGTCACTGGGCACCCTTGTCCTGGGTCACCACCATTTTCTCCTCCTCCTCCTTTTGTCCCACCATCCCCGATCTCAGGTCCAGGAGGAAATAGTGCCACTGGTGCAATAGCTGGAGGAGTAGCTGCAGGTGCTGCTCTGTTATTTGCTGCTCCAGCAATTGCATTTGCATGGTGGCGTCGAAGGAAACCACAAGAATTTTTCTTTGATGTACCTGCTGAAGAAGATCCAGAAGTACACCTTGGGCAGCTCAAGAGGTTCTCACTCCGGGAACTGCAAGTTGCAACAGATACTTTTAGTAATAAAAACATTCTTGGAAGGGGAGGATTTGGTAAGGTGTACAAAGGACGCTTGGCAGATGGTTCACTGGTTGCTGTGAAAAGATTGAAAGAGGAGCGCACACCTGGTGGGGAACTTCAGTTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTGCACCGAAATCTCCTCCGTTTACGTGGGTTCTGTATGACACCAACAGAAAGACTACTTGTATATCCTTACATGGCTAATGGAAGTGTTGCCTCATGCTTAAGAGAGCGTCCAGCACATCAACAACCCCTTGATTGGCCAACAAGAAAAAGAATAGCATTGGGATCATCAAGAGGTCTTTCATATTTGCATGATCACTGTGATCCAAAGATTATCCACCGTGATGTAAAAGCTGCAAACATATTGTTGGATGAGGAGTTTGAGGCTGTTGTTGGGGATTTTGGGTTGGCTAAACTGATGGACTACAAGGACACCCATGTTACGACTGCTGTACGTGGCACAATTGGGCACATAGCCCCAGAGTACTTATCTACTGGTAAATCTTCAGAGAAAACTGACGTATTTGGTTATGGTATAATGCTTCTGGAGCTGATCACTGGACAAAGGGCTTTTGACTTAGCTCGACTTGCGAATGATGATGATGTTATGTTGCTGGATTGGGTTAAAGGACTTTTGAAGGAAAAGAAGCTAGAAATGCTTGTGGACCCTGATCTCCATAGCAATTACATAGATGCTGAGGTGGAACAGTTAATTCAGGTTGCACTGCTTTGCACACAAGGTTTCCCTATGGACCGGCCTAAGATGTCAGAAGTGGTGCGAATGCTTGACGGTGACGGTTTGGCCGATAGATGGGACGAGTGGCAAAAGGTGGAGGTTCTGCGCCAGGAAGTGGATCTCACCCCTCATTCCAATTCTGATTGGATTGTTGACTCAACTGAAAATCTACATGCAGTTGAGTTATCTGGTCCAAGGTAA 1803 0.452 MERKFWGFVFFWWVLLAHPLCLVSANMEGDALHNLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVELYSNNISGPIPSDLGNLTNLVSLDLYLNRFSGPIPESLGKLSKLRFLRLNNNSLTGPIPMSLTNVTALQVLDLSNNRLSGVVPDNGSFSLFTPISFTNNLDLCGPVTGHPCPGSPPFSPPPPFVPPSPISGPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPAHQQPLDWPTRKRIALGSSRGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLHSNYIDAEVEQLIQVALLCTQGFPMDRPKMSEVVRMLDGDGLADRWDEWQKVEVLRQEVDLTPHSNSDWIVDSTENLHAVELSGPR 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5417g00002 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 400 412 IPR008271 GO:0004672|GO:0006468
Vium5417g00002 600 FunFam Somatic embryogenesis receptor kinase 1 246 353 - -
Vium5417g00002 600 SUPERFAMILY Protein kinase-like (PK-like) 256 551 IPR011009 -
Vium5417g00002 600 Gene3D Phosphorylase Kinase; domain 1 246 353 - -
Vium5417g00002 600 Gene3D Transferase(Phosphotransferase) domain 1 354 571 - -
Vium5417g00002 600 FunFam Somatic embryogenesis receptor-like kinase 1 354 571 - -
Vium5417g00002 600 SMART serkin_6 277 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5417g00002 600 SUPERFAMILY L domain-like 28 161 - -
Vium5417g00002 600 ProSiteProfiles Protein kinase domain profile. 277 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5417g00002 600 FunFam Somatic embryogenesis receptor kinase 1 73 187 - -
Vium5417g00002 600 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Vium5417g00002 600 ProSitePatterns Protein kinases ATP-binding region signature. 283 305 IPR017441 GO:0005524
Vium5417g00002 600 Pfam Protein kinase domain 278 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5417g00002 600 Gene3D Ribonuclease Inhibitor 24 187 IPR032675 -
Vium5417g00002 600 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5417g00002 Vium-Chr5417 1122 12559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5417g00002 1 600 Receptor kinase-like Gene Family AT1G71830 84.960 0.0 988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vium5417g00002 Pkinase 5.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5417g00002 K13418 - gmx:100813918 1052.74