Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5417g00001 ATGGAGAGAAAGTTTTGGGGGTTTGTTTTCTTCTGGTGGGTGCTCTTAGCTCACCCATTGTGCTTGGTTTCTGCTAACATGGAAGGTGACGCCTTACATAATCTGAGGACAAATTTACAGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACATTGGTGAATCCATGCACGTGGTTTCATGTAACATGCAACAATGATAATAGTGTCATTAGAGTTGATCTGGGAAATGCTGCTTTGTCTGGTCAACTTGTTCCACAGCTTGGCCAACTTAAAAACTTACAGTATTTGGAACTTTACAGCAATAACATTAGTGGACCAATTCCAAGTGATCTGGGAAATCTTACTAATTTGGTGAGCTTGGATTTGTATCTGAACCGCTTCAGTGGACCTATCCCAGAGTCATTGGGCAAATTGTCAAAATTGCGCTTCCTCCGGCTTAACAACAACAGCCTTACTGGTCCTATTCCCATGTCACTGACTAATGTCACTGCTTTGCAAGTGCTGGATTTGTCTAATAACCGTCTCTCAGGTGTGGTTCCTGATAATGGCTCCTTCTCACTATTCACTCCCATCAGTTTTACCAACAACTTGGACTTATGTGGCCCAGTCACTGGGCACCCTTGTCCTGGGTCACCACCATTTTCTCCTCCTCCTCCTTTTGTCCCACCATCCCCGATCTCAGGAGGAAATAGTGCCACTGGTGCAATAGCTGGAGGAGTAGCTGCAGGTGCTGCTCTGTTATTTGCTGCTCCAGCAATTGCATTTGCATGGTGGCGTCGAAGGAAACCACAAGAATTTTTCTTTGATGTACCTGCTGAAGAAGATCCAGAAGTACACCTTGGGCAGCTCAAGAGGTTCTCACTCCGGGAACTGCAAGTTGCAACAGATACTTTTAGTAATAAAAACATTCTTGGAAGGGGAGGATTTGGTAAGGTGTACAAAGGACGCTTGGCAGATGGTTCACTGGTTGCTGTGAAAAGATTGAAAGAGGAGCGCACACCTGGTGGGGAACTTCAGTTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTGCACCGAAATCTCCTCCGTTTACGTGGGTTCTGTATGACACCAACAGAAAGACTACTTGTATATCCTTACATGGCTAATGGAAGTGTTGCCTCATGCTTAAGAGAGCGTCCAGCACATCAACAACCCCTTGATTGGCCAACAAGAAAAAGAATAGCATTGGGATCATCAAGAGGTCTTTCATATTTGCATGATCACTGTGATCCAAAGATTATCCACCGTGATGTAAAAGCTGCAAACATATTGTTGGATGAGGAGTTTGAGGCTGTTGTTGGGGATTTTGGGTTGGCTAAACTGATGGACTACAAGGACACCCATGTTACGACTGCTGTACGTGGCACAATTGGGCACATAGCCCCAGAGTACTTATCTACTGGTAAATCTTCAGAGAAAACTGACGTATTTGGTTATGGTATAATGCTTCTGGAGCTGATCACTGGACAAAGGGCTTTTGACTTAGCTCGACTTGCGAATGATGATGATGTTATGTTGCTGGATTGGGTTAAAGGACTTTTGAAGGAAAAGAAGCTAGAAATGCTTGTGGACCCTGATCTCCATAGCAATTACATAGATGCTGAGGTGGAACAGTTAATTCAGGTTGCACTGCTTTGCACACAAGGTTTCCCTATGGACCGGCCTAAGATGTCAGAAGTGGTGCGAATGCTTGACGGTGACGGTTTGGCCGATAGATGGGACGAGTGGCAAAAGGTGGAGGTTCTGCGCCAGGAAGTGGATCTCACCCCTCATTCCAATTCTGATTGGATTGTTGACTCAACTGAAAATCTACATGCAGTTGAGTTATCTGGTCCAAGGTAA 1869 0.4494 MERKFWGFVFFWWVLLAHPLCLVSANMEGDALHNLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYSNNISGPIPSDLGNLTNLVSLDLYLNRFSGPIPESLGKLSKLRFLRLNNNSLTGPIPMSLTNVTALQVLDLSNNRLSGVVPDNGSFSLFTPISFTNNLDLCGPVTGHPCPGSPPFSPPPPFVPPSPISGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPAHQQPLDWPTRKRIALGSSRGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLHSNYIDAEVEQLIQVALLCTQGFPMDRPKMSEVVRMLDGDGLADRWDEWQKVEVLRQEVDLTPHSNSDWIVDSTENLHAVELSGPR 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5417g00001 622 FunFam Somatic embryogenesis receptor kinase 1 24 211 - -
Vium5417g00001 622 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Vium5417g00001 622 Gene3D Phosphorylase Kinase; domain 1 268 375 - -
Vium5417g00001 622 Gene3D Transferase(Phosphotransferase) domain 1 376 593 - -
Vium5417g00001 622 FunFam Somatic embryogenesis receptor kinase 1 268 375 - -
Vium5417g00001 622 SUPERFAMILY Protein kinase-like (PK-like) 278 573 IPR011009 -
Vium5417g00001 622 FunFam Somatic embryogenesis receptor-like kinase 1 376 593 - -
Vium5417g00001 622 SUPERFAMILY L domain-like 28 192 - -
Vium5417g00001 622 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Vium5417g00001 622 SMART serkin_6 299 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5417g00001 622 ProSiteProfiles Protein kinase domain profile. 299 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5417g00001 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Vium5417g00001 622 Gene3D Ribonuclease Inhibitor 24 211 IPR032675 -
Vium5417g00001 622 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 583 - -
Vium5417g00001 622 Pfam Protein kinase domain 300 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5417g00001 Vium-Chr5417 1122 12559 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5417g00001 1 622 Receptor kinase-like Gene Family AT1G71830 88.000 0.0 1033
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vium5417g00001 Pkinase 5.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5417g00001 K13418 - gmx:100813918 1118.61