Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5416g00016 ATGGTTTTCCTATCTCTGGTCTTTCTGTTAATTTGTTTGTACACTTTTTCTGAGTCAGTGTTATGTTCTGTAGAGGATTTTGAAGGACAGAAAGCATTCTACAGCAATGAAGAGAAACGGAAAGATAAGAAAAGTTTAATGAGCAACGACCAAGAAGACGACAATCTTTTGGCTGAGGCAAGGCAACCATTGTGGCGCAAGGTTCCAATAGCTTCAAGCCTAATCAACCCATATCGCATAGTCATAATCTTGCGTGTGGTTATCCTAGTTTTCTTCTTCCACTTGCGCATAACAACTCCAGTGCATGATGCACTTGCCTTATGGATAATCTCTGTAGTCTGTGAAATCTGGCTTGCATTATCTTGGATGGTTGACCAACTCCCCAAGTGGTTCCCTATTACTCGTGAAACTTACCTTGAACGTTTGTCCTTAAGGTTTGAGAGTGAAGGAGAGCCAAACCTTCTAGCCCCGGTTGATATCTTTGTAACCACTGCAGACCCTTTTAAGGAACCACCTATTATAACAGCAAACACGGTTTTATCAGTCTTGTCTGTTGATTACCCTGTTGATAAGGTTAGCTGCTATGTCTCAGATGACAGTGCTTCAATGCTTCTCTTTGATACCTTGTCAGAAACTGCCGAGTTTGCTAGAATATGGGTTCCTTTTTGTAACAAATACAACATTGAGACAAGGGCACCTGAGTTTTATTTCTCTGAGAAACTTGATTACTTGAAAGATAAGGTGCACCCTACATTTGTTAAGGATCGCAGGGCTATGAAGAGAGAATACGAAGAATTCAAGGTGAAAATTAACATACTGGTTGCAAAGGCTCAGAAGAAACCAGAAGAAGGTTGGGTTATGAAAGACGGTAACCCATGGCCTGGGAGCAACATGGATGATCATCCAGGAATGATTCAGGTATGTCTAGGAAGTACTGGCTCACTGGATAAGGAAGGCAAAGAATTACCTCGGCTTGTGTATGTTTCCAGGGAAAAACGTCCTGGATATCAACACCACATGAAAGCTGGTGCCATGAATGCTCTGGTTCGAGTTTCTGCTGTGCTTACGAATGCACCTTTTGCACTAAATCTGGATTGTGACCAATTCATCAATAACAGCAAGGTTCTTAGGGAGTCCATGTGCTTTTTAATGGACCCCCAACTTGGAAAGAAGTTCTGTTATGTCCAATTTCCAAAAAGGTTCAATGGCATCGATTGCAATGACAGATATGCTAATCACAATACTGTGTTCTTTGATATCAACATGAAATGCCTTGATGGGATTCAAGGTCCTCTGTATGTTGGTACTGGATGTGTGTTCAACAGGCAAGCATTATATGGCTTTGATCCACTTTCTGATAAAAGGCCAAAGATAAAGAGTTGCTGCTGGCCTTCATCCTGCAGCTGCTGTTGTAGTGACTCCGAGTCTTCATCTGATGACGACACTGATCAGGAACTTGTAGACTTTGATGACGAAGAGGAAGAGGAATTATCCTTCATGTCCATGAAAAGTTTAGAGAAACGATTTGGACAATCACCGGTTTTCATTGCTTCTGCTTTGATGGAAGATGGTGGACTTCCCAAAGGCACAAACACCCGAGTACTGATTAAGGAAGCAATTCATGTTATAAGCTGTGACTATGAAGAGAAAACTGAATGGGGAAAAGAGATTGGGTGGCTATATGGTTCAGTCACAGAAGACATTTTAACTGGGTTCAACATGCATTGTAGAGGATGGAAATCAGTGTACTGCATGCCAAAGAAAGCAGCTTTTAAGGGATCTGCTCCTATAAATCTATCAAATCGATTACACCAAGTTCTGAAATGGGCTGCTGGTTCTACTGAGATTTTCTTTAGTGGCTATTGTCCTTTGTGGTATGGCTATAGTGGAAAACTGAAATTGCTACAGAGGTTGGCCTACGTTAACTCCATCGTCTATCCATTTACCTCTATCCCCCTGCTGATCTACTGTACAATTCCTGCTGTCTGTCTTCTGACTGGAAAGTTCATCATCCCCACTCTGTCAAACCTTGCTAGCATTTGGTTAATGGCCTTATTTATCTCCATCATCTTAACTTGTGTGCTAGAGCTTCGTTGGAGTGGGGTTAGCATTCATGACTGGTGGCGCAATGAGCAATTCTGGGTCATTGGGGGTGTATCTTCACACCTTTTTGCTGTATTTCAAGGTCTTCTTAAAGTTGGAGGAGTAAACTCTAGCTTCACCGTGAGAGCAAAATCAGCTCATGACACTTCATTTGGACAGTTCCATCTCTTCAAGTGGACTAGTCTTCTAATCCCACCAACAAGTCTTGTGATCTTAAATATGGTGGGAATTGTGGCTGGAATCTCTGATGCCATTAACAATGGCTATGACTCATGGGGACCTTTCTTTGGGAAGCTTTTCTTCTCCTTGTGGGTCATTGTGCACTTGTATCCTTTCCTCAAAGGACTAATGGGAAAGCAAAACAGAACCCCTACCATTGTAGTCCTCTGGTCAATACTTGTAGCCATAATTTTCTCAATGATTTGGGTGAGAATTGATATTTTCTTGCCCAAGCAGACAGGTCCAGCACTCAGACAGTGTGGGACAAGATGCTAA 2598 0.4207 MVFLSLVFLLICLYTFSESVLCSVEDFEGQKAFYSNEEKRKDKKSLMSNDQEDDNLLAEARQPLWRKVPIASSLINPYRIVIILRVVILVFFFHLRITTPVHDALALWIISVVCEIWLALSWMVDQLPKWFPITRETYLERLSLRFESEGEPNLLAPVDIFVTTADPFKEPPIITANTVLSVLSVDYPVDKVSCYVSDDSASMLLFDTLSETAEFARIWVPFCNKYNIETRAPEFYFSEKLDYLKDKVHPTFVKDRRAMKREYEEFKVKINILVAKAQKKPEEGWVMKDGNPWPGSNMDDHPGMIQVCLGSTGSLDKEGKELPRLVYVSREKRPGYQHHMKAGAMNALVRVSAVLTNAPFALNLDCDQFINNSKVLRESMCFLMDPQLGKKFCYVQFPKRFNGIDCNDRYANHNTVFFDINMKCLDGIQGPLYVGTGCVFNRQALYGFDPLSDKRPKIKSCCWPSSCSCCCSDSESSSDDDTDQELVDFDDEEEEELSFMSMKSLEKRFGQSPVFIASALMEDGGLPKGTNTRVLIKEAIHVISCDYEEKTEWGKEIGWLYGSVTEDILTGFNMHCRGWKSVYCMPKKAAFKGSAPINLSNRLHQVLKWAAGSTEIFFSGYCPLWYGYSGKLKLLQRLAYVNSIVYPFTSIPLLIYCTIPAVCLLTGKFIIPTLSNLASIWLMALFISIILTCVLELRWSGVSIHDWWRNEQFWVIGGVSSHLFAVFQGLLKVGGVNSSFTVRAKSAHDTSFGQFHLFKWTSLLIPPTSLVILNMVGIVAGISDAINNGYDSWGPFFGKLFFSLWVIVHLYPFLKGLMGKQNRTPTIVVLWSILVAIIFSMIWVRIDIFLPKQTGPALRQCGTRC 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5416g00016 865 FunFam Cellulose synthase 275 449 - -
Vium5416g00016 865 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 264 453 IPR029044 -
Vium5416g00016 865 SUPERFAMILY Nucleotide-diphospho-sugar transferases 169 681 IPR029044 -
Vium5416g00016 865 Pfam Cellulose synthase 158 858 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vium5416g00016 865 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 61 832 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5416g00016 Vium-Chr5416 121335 125943 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5416g00016 49 865 Cell Wall Biosynthesis AT5G17420 68.331 0.0 1208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5416g00016 K10999 - gmx:100777278 1513.82