Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5416g00012 ATGGGAAGCAGAATTAGAGAGAGGAGGGAAGGTGAAACTAGGAGAAGTTTGAGGAAGATAATGAAGTGTCTACGGTCAGGAGATTCGTTGGGAGGAGCTGATGAAGTGTTTCCTTCTTCTGGATCTCTTGCAAGTGCAACCAAGGACTTTTCAGCTAGTGAACACTCTTGCTTAGGCGAACACATTGATAAGAAGCCGGACACTGGGAACATAGAAGAAGCTGAATCATCCTTACGTGAGAGTGGTGTCTTGAACTATGAGGAAGCTAGAGCTCTGCTAGGAAGATATGAATATCAGAAAGGAAATATAGTAGCTGCTTTACATGTCTTTGAGGGAATAGACATAGGTGTTGTGACTCCTAAGATCAAAATTGCCCTTTCCAGAAGCAGAGAACGCCGCAAGAAACATTCTCAAAATCATACTGAACCGCAAATGTCTATACATTCTGTTGGCTTATTGTTGGAATCTGTCTTCCTCAAAGCAAAATCTTTGCAGATTCTTGAAAGGTTTAAAGAGGCTGCCCAATCTTGCAAAGTTATTTTGGATATAGTGGAATCTTCATTACCCGAAGGCTTGCCTGATAACTTCGGTGCTGAATGTAAATTACAGGAGACCCTGAACAAGGCAGTTGAGCTGCTTCCAGAATTATGGAAACTTTCTGATTGTCCACGTGAAGCTATTTTGTCTTACCGACGAGCTCTTCTTCATCAATGGAATCTTGATGCAGAGACTATAGCAAAAATTCAGAAAGAATTTGTTGTTTTTCTTCTTTACAGTGGAGGAGAAGCCACACCGCCCAATCTCCGTTCCCAAATGGATGGCTCATTTGTACCTAGAAATAACATAGAAGAGGCTATACTTATCTTAATGATTTTGTTAAGAAAAGTCACTCTAAATAGAATTGAGTGGGATCCTTCAATTTTAGACCACCTCTCATTTGCTCTTTCAGTTTCTGGAGATTTGACGGCTTTAGCCAATCAATTGGAAGAATTACTTCCACGGACAATTACTAGAAGTGAAAGGTACTACACTCTAGCTCTTTGTTATTATGGAGCAGGTAGGGATCTGATAGCACTGGATTTTCTCAGAAAGTTGTTGAGGTGTAGAGAGGACCAAGACCATGTTCCTGGTTTGTTAATGGCTTCTAAGATTTGTTGTGAGAACTGTTCTCTTGCAGAAGAAGGAGTAAGCTTTGCCAAGCGAGTGCTTCAGAACTTGGATGGCAGATGTAATCAGCAAGAAGATCATGCTAATTTCTTTCTTGGTGTCTCACTTTCAGCCCAGTCGAAACTGGCTATTTCTGATTCTGAAAGGTTTAAGAGACAATCTGAGGCACTTCATGCCCTAGAAACTGCTGCCAGAACAAGAAACCCCCTTGTACTATACCATCTCAGTCTAGAATATGCAGAACAAAGGAAGTTGGATGCTGCACTTCATTATGCAAAATGCTGCATAAAACTGGAAGGTAGTTCTAACATTAAAGGATGGTTGTTGTTAGCCCGGATATTGTCTGCTCAAAAGCAGTTTCTGGATGCCGAATCTATCATCGATTCTGCTTTGGATCAAACTGGAAAATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGAAAGTTAAGGAATGCCATTGAGACATATACTCAGCTTCTTGCTGTTCTTCAAATTCAGAGTAAAGGTTTTGGTTCTGGAAAGAAGCTATATAAGGACAATAGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGATATTACTTATGTATATATCAGTCTTTTACAGTGGCATGATGCAGAGGTGTGTCTTTCAAAATCCAAGGCCATCAAACCACTCTCTGCATCTAGATGTCATGCAATAGGCGTAATGTACGAAGCAAAGGGCCATTACAAAGAGGCTCTAAAATCCTATGGCGATGCTTTGGACATTGATCCTGGTCATGTCCTTAGCTTAGTCTCCAGTGCTGTAGTTCTTAAACGATGTAGTAGTCACTCAAATCCAACAGTTAAAAGCTTTTTGATGGAAGCACTACGACACGACAGATTCAATGCTTCTGCTTGGTATAATCTTGCCCTTCTTCACAAAGCTGAGGGCACAGCATCATCATTAGTTGAAGCGGCAGAATGTTTTCAAGCTGCACATTTTCTTGAAGAATCTGAACCTGTTGAACCTTTCAGATGA 2196 0.4089 MGSRIRERREGETRRSLRKIMKCLRSGDSLGGADEVFPSSGSLASATKDFSASEHSCLGEHIDKKPDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNIVAALHVFEGIDIGVVTPKIKIALSRSRERRKKHSQNHTEPQMSIHSVGLLLESVFLKAKSLQILERFKEAAQSCKVILDIVESSLPEGLPDNFGAECKLQETLNKAVELLPELWKLSDCPREAILSYRRALLHQWNLDAETIAKIQKEFVVFLLYSGGEATPPNLRSQMDGSFVPRNNIEEAILILMILLRKVTLNRIEWDPSILDHLSFALSVSGDLTALANQLEELLPRTITRSERYYTLALCYYGAGRDLIALDFLRKLLRCREDQDHVPGLLMASKICCENCSLAEEGVSFAKRVLQNLDGRCNQQEDHANFFLGVSLSAQSKLAISDSERFKRQSEALHALETAARTRNPLVLYHLSLEYAEQRKLDAALHYAKCCIKLEGSSNIKGWLLLARILSAQKQFLDAESIIDSALDQTGKWDQGDLLRTKAKLQIAQGKLRNAIETYTQLLAVLQIQSKGFGSGKKLYKDNRDRARNLEVEIWHDITYVYISLLQWHDAEVCLSKSKAIKPLSASRCHAIGVMYEAKGHYKEALKSYGDALDIDPGHVLSLVSSAVVLKRCSSHSNPTVKSFLMEALRHDRFNASAWYNLALLHKAEGTASSLVEAAECFQAAHFLEESEPVEPFR 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5416g00012 731 Gene3D Tetratricopeptide repeat domain 566 727 IPR011990 GO:0005515
Vium5416g00012 731 Gene3D Tetratricopeptide repeat domain 125 565 IPR011990 GO:0005515
Vium5416g00012 731 SUPERFAMILY TPR-like 530 703 IPR011990 GO:0005515
Vium5416g00012 731 Pfam Tetratricopeptide repeat 620 651 IPR019734 GO:0005515
Vium5416g00012 731 SUPERFAMILY TPR-like 155 482 IPR011990 GO:0005515
Vium5416g00012 731 SUPERFAMILY HCP-like 440 556 - -
Vium5416g00012 731 PANTHER PROTEIN NPG1 21 731 IPR043376 -
Vium5416g00012 731 SMART tpr_5 585 618 IPR019734 GO:0005515
Vium5416g00012 731 SMART tpr_5 339 372 IPR019734 GO:0005515
Vium5416g00012 731 SMART tpr_5 154 187 IPR019734 GO:0005515
Vium5416g00012 731 SMART tpr_5 619 652 IPR019734 GO:0005515
Vium5416g00012 731 SMART tpr_5 493 526 IPR019734 GO:0005515
Vium5416g00012 731 SMART tpr_5 529 562 IPR019734 GO:0005515
Vium5416g00012 731 SMART tpr_5 458 491 IPR019734 GO:0005515
Vium5416g00012 731 SMART tpr_5 689 725 IPR019734 GO:0005515
Vium5416g00012 731 ProSiteProfiles TPR repeat profile. 619 652 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5416g00012 Vium-Chr5416 104461 109599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5416g00012 14 731 Calmodulin-binding Proteins AT4G28600 57.866 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5416g00012 K21843 - gmx:100800762 1268.83