Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5416g00004 ATGGAGCATGTGATTGGTGGCAAGTTTAAATTGGGAAGGAAAATTGGGAGCGGGTCTTTTGGGGAGCTCTATTTAGGTGTTAATATACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAGCCTGTGAAGACCAGACATCCTCAGCTTCACTATGAGTCAAAACTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCACCTCAAGTGGTTTGGAATTGAGGGAGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTTTGGAAGATTTGTTCAATTATTGTAACCGGAAGTTCTCGTTGAAGACAGTGTTAATGCTTGCTGATCAGCTGATTAACAGAGTTGAATATATGCATTCCAGAGGTTTCCTTCACCGTGACATCAAGCCTGACAATTTCTTAATGGGTCTAGGACGGAAAGCAAATCAAGTGTATGCCATTGATTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGTACAGCACGCTATGCAAGTGTCAATACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTACGTGCTCATGTATTTCTTAAGAGGAAGTCTTCCCTGGCAGGGACTGAAGGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGACAAAGGTGTCTACTCCCATAGAGGTGCTTTGCAAATCCTATCCCTCTGAATTTGTATCATACTTCCACTATTGCCGTTCTTTGCGATTTGAGGACAAACCAGATTATTCATATTTAAAGAGACTTTTCCGAGACCTGTTTATTAGAGAAGGCTATCAATTTGACTACATTTTCGACTGGACTATGTTAAAGTATCCACAGATCAGTAGTAGCTCAAGAGGACGGCAGCATGGCACTGGCAAGGCAGCTGGGCAAGCAAGTCCACATGTACAAAAGCCAGAAAAAATCTCAGTTGGGAAAGACATTCGAGAGAAATTCTCTGGTGCAGTTGAAGCATTCTCCAGGAGGAATCCTGCAGGTTCGAGTCCTCACGTTGATCACGTCAAACAGAGGAGTTTTGAGGATGTACCGGTGCAAAAGGATATGCACTATGGCCAGCACAATACTGGTCGATATGGCAGCACTTCTAGAAAAGCCATGATCACATCAAACAAGCCAGTTTCCTCAGGTGACCATACTGGCAGGCCAACCATGACTGGGAGCCGTCCATCTGGTTCTAATAGAGTTCAACCGGCATATGACACCAAACAAGCAAATTATGCACGCGGTGCTGGTGTCCGTGGCAGAGGCCACCGCGATGATCCTCTGAGAAGCTTTGAGCTCCTCAACATCAGGAAGTAA 1371 0.442 MEHVIGGKFKLGRKIGSGSFGELYLGVNIQTGEEVAVKLEPVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGIEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISETKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYIFDWTMLKYPQISSSSRGRQHGTGKAAGQASPHVQKPEKISVGKDIREKFSGAVEAFSRRNPAGSSPHVDHVKQRSFEDVPVQKDMHYGQHNTGRYGSTSRKAMITSNKPVSSGDHTGRPTMTGSRPSGSNRVQPAYDTKQANYARGAGVRGRGHRDDPLRSFELLNIRK 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5416g00004 456 FunFam Casein kinase 1-like protein 1 331 - -
Vium5416g00004 456 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5416g00004 456 CDD STKc_CK1_delta_epsilon 8 282 - -
Vium5416g00004 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vium5416g00004 456 MobiDBLite consensus disorder prediction 378 424 - -
Vium5416g00004 456 PANTHER CASEIN KINASE-RELATED 8 336 - -
Vium5416g00004 456 FunFam Putative Casein kinase I 1 85 - -
Vium5416g00004 456 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5416g00004 456 MobiDBLite consensus disorder prediction 301 328 - -
Vium5416g00004 456 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5416g00004 456 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vium5416g00004 456 Gene3D Transferase(Phosphotransferase) domain 1 1 347 - -
Vium5416g00004 456 MobiDBLite consensus disorder prediction 373 426 - -
Vium5416g00004 456 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5416g00004 Vium-Chr5416 32550 40194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5416g00004 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 2.28e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vium5416g00004 Pkinase 4.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5416g00004 K08960 - gmx:100789031 843.958