Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5416g00003 ATGGAGGGTCCACCACAGGTAACCATGACATGCTTCGGAACCTCAACGGAACTCCTCGTTGAAACTGGGAAACAGCTCTCCAACTTTGCAAGAAGGCTTGGCATGTCATTCAAGTTCCACCCCATTGCAAGCAAGTTTGGGGAAGTAATCGATGTGTCTATGCTGCATGTAAAGCCTGGCGAGGCACTGGCAGTGCATTGGTTGCAGCATTCACTGTACGATGCAACTGGACCTGATTGGAAAACACTAAGGCTCCTTGAGGAGTTGGAGCCAAGAATAATCACCTTGGTGGAGCAAGATGTGAACCATGGAGGCTCATTCTTGGATCGTTTTGTGGGCTCCTTGCACTACTACTCCACCCTATTTGATTCTCTTGGAGCATACTTACACTTTGATGATGAAAACAGGCACCGTGTGGAGCATGCCCTTCTCTCTAGGGAAATCAACAATGTGTTGGCCATAGGAGGCCCTAAGAGGAACGGTGAAGACAAGTTTAGGCAGTGGAGAAGAGAGCTTGCTAACCACTATTTTCAGCAGATTCCCATGAGTGCCAATTCAATGGCTCAAGCTCAGTTGATATTGAACATGTTCTCACCAGCTTATGGGTATAGTCTTGCACAAGTTGATGGCACATTAAGGCTTGGATGGAAGGATACAAGTTTGTACACAGCTTCTGCATGGACCTGTTGTACTTCTAACTAG 702 0.4701 MEGPPQVTMTCFGTSTELLVETGKQLSNFARRLGMSFKFHPIASKFGEVIDVSMLHVKPGEALAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDVNHGGSFLDRFVGSLHYYSTLFDSLGAYLHFDDENRHRVEHALLSREINNVLAIGGPKRNGEDKFRQWRRELANHYFQQIPMSANSMAQAQLILNMFSPAYGYSLAQVDGTLRLGWKDTSLYTASAWTCCTSN 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5416g00003 233 ProSiteProfiles GRAS family profile. 1 228 IPR005202 -
Vium5416g00003 233 Pfam GRAS domain family 2 228 IPR005202 -
Vium5416g00003 233 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 224 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5416g00003 Vium-Chr5416 22170 22871 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5416g00003 3 228 GRAS Transcription Factor Family AT3G54220 56.195 3.05e-82 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium5416g00003 GRAS 5.5e-59 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5416g00003 - - vum:124840722 475.707