Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5416g00002 ATGATGAAAGTGGGATTCGAGCTGGTTCATGCAAATTATAATCCAAACATGATTCGTTCGCACATGCATGAAACATGGGATCACTACTCAAATATTATTACTTCCTTGCCATTTTCTGCTCCAACCCCATCAAACCTATATCCAAAGCCAGCAACAGAAAACCAGTGCCTAAACATGGGGCAGAATGAAGTCTCTGATTGGATGGAGGAACACATTGATGACATCACTAAACACCTTGTTGAAGACTTACCAGAAACCACTTCTGATAGCTTGGTGCCAAATAACACAACAAGGGTTTCCCATCACAACCTTGTTCCCTCACTTTTACCCAACTTGATCAGTGAAAGAAAAGCTTCAGGCTTTAGACCCCAATTTGAGGCCATCACCAATGTTCACTCAGGTTTAGATCATAGCTACAATGTCTGTGATCAAGGGTTGAGCCTCATAAGCCTTCTAATGGAGTGTGCAGTGGCAATTTCAGTCGACAACCTGGGTGAGGCTCATAGGATGTTACTAGAGCTAACACAAATGGCCTCTCCCTACAAAGCATCGTGTGGTGAACGCGTTGTTGCTTATTTTACCAAGGCCATGACTTGCAGGGTCATGAATTCTTGGCTTGGGATGTGTTCCCCTTTGCTTGATCACAGAAACATTAACTCAGCATTCCAAGTCTTCAACAACGTTTCCCCTTTCATAAAATTTGCTCACTTCACTTCCAACCAGGCAATCCTTGAGGCAGTAAACCATTGTGACAGTATTCACATAATCGACTTGGACATCATGCAAGGCCTGCAATGGCCAGCTTTTTTCCATATATTAGCCACCAGAATGGAGGGTCCACCACAGGTAACCATGACATGCTTCGGAACCTCAACGGAACTCCTCGTTGAAACTGGGAAACAGCTCTCCAACTTTGCAAGAAGGCTTGGTATGTCATTCAAGTTCCACCCCATTGCAAGCAAGTTTGGGGAAGTAATCGATGTGTCTTTGCTGCATGTAAAGCCTGGCGAGGCACTGGCAGTGCATTGGTTGCAGCATTCACTGTACGATGCAACTGGACCTGATTGGAAAACACTAAGGCTCCTTGAGGAGTTGGAGCCAAGAATAATCACCTTGGTGGAGCAAGATGTGAACCATGGAGGCTCATTCTTGGATCGTTTTGTGGGCTCCTTGCACTACTACTCCACCCTATTTGATTCTCTTGGAGCATACTTACACTTTGATGATGAAAACAGGCACCGTGTGGAGCATGCCCTTCTCTCTAGGGAAATCAACAATGTGTTGGCCATAGGAGGCCCTAAGAGGAACGGTGAAGACAAGTTTAGGCAGTGGAGAAGAGAGCTTGCTAACCACTATTTTCAGCAGATTCCCATGAGTGCCAATTCAATGGCTCAAGCTCAGTTGATATTGAACATGTTCTCACCAGCTTATGGGTATAGTCTTGCACAAGTTGATGGCACATTAAGGCTTGGATGGAAGGATACAAGTTTGTACACAGCTTCTGCATGGACCTGTTGTACTTCTAACTAG 1530 0.449 MMKVGFELVHANYNPNMIRSHMHETWDHYSNIITSLPFSAPTPSNLYPKPATENQCLNMGQNEVSDWMEEHIDDITKHLVEDLPETTSDSLVPNNTTRVSHHNLVPSLLPNLISERKASGFRPQFEAITNVHSGLDHSYNVCDQGLSLISLLMECAVAISVDNLGEAHRMLLELTQMASPYKASCGERVVAYFTKAMTCRVMNSWLGMCSPLLDHRNINSAFQVFNNVSPFIKFAHFTSNQAILEAVNHCDSIHIIDLDIMQGLQWPAFFHILATRMEGPPQVTMTCFGTSTELLVETGKQLSNFARRLGMSFKFHPIASKFGEVIDVSLLHVKPGEALAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDVNHGGSFLDRFVGSLHYYSTLFDSLGAYLHFDDENRHRVEHALLSREINNVLAIGGPKRNGEDKFRQWRRELANHYFQQIPMSANSMAQAQLILNMFSPAYGYSLAQVDGTLRLGWKDTSLYTASAWTCCTSN 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5416g00002 509 ProSiteProfiles GRAS family profile. 139 504 IPR005202 -
Vium5416g00002 509 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 124 500 IPR005202 -
Vium5416g00002 509 Pfam GRAS domain family 148 504 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5416g00002 Vium-Chr5416 16111 18079 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5416g00002 143 504 GRAS Transcription Factor Family AT3G54220 55.014 3.45e-135 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium5416g00002 GRAS 1.3e-103 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5416g00002 - - gmx:100775656 860.907