Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5416g00001 ATGGATTCTGCAAGGAGTTGGCTTCAGAAGTTCCAGCCTCGAGATAGAACCAGGGCTGCTGCGAAGAAGAAGGAGGAGGATAGTATTGGAGGAAACGAGGATTTGAATGCGGCGGTGGATGAAGCAGTGCTTTCCAGTGTCACGAAACAGAAGGTGGCCGCAGCAAAGCAGTACATTGAAAATCATTACAAGGAGCAAATGAAGAACCTTCAGGAGAGGAAAGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCTGATGCTGATGTCTCTGAGGAGGATCAAAACAACCTGCTTAATTTTTTAGAGAAAAAGGAAACTGAATATATGCGCCTTCAGAGGCATAAGATGGGTGTTGATGATTTTGAGTTATTAACAATGATAGGAAAAGGAGCATTTGGAGAGGTCAGAGTCTGTAGGGAGAAGACTAGTGGTCATGTGTATGCAATGAAGAAGCTAAAAAAATCAGAGATGCTCCGCAGAGGCCAGGTTGAGCATGTTAAAGCTGAAAGGAATCTCCTCGCAGAGGTTGACAGCAATTGCATAGTCAAACTTTATTGTTCATTCCAGGATGCTGAATATTTGTATCTTATTATGGAGTATCTACCGGGTGGGGATATGATGACTCTACTAATGAGAAAGGATACCTTGACCGAAGATGAAGCCAGATTTTATGTTGGAGAAACTGTTCTGGCTATTGAATCTATACATAAACACAATTATATACACAGGGATATCAAGCCAGTCAATTTGTTACTTGAAAGATACGGGCACTTGAAATTGTCAGATTTTGGACTTTGTAAACCATTAGATTGCAATACACTTGAAGAAAAGGATTTTTCTGTGGGTCAGAATGTGAATGGAACTCCACAAAACGAAGAGCGGATAACTCCTAAACGTTCACAACAAGAACAACTTCAACATTGGCAAATGAACAGGAGAACACTTGCTTTCTCTTGCTTTGGGACCATTCATTATATTCCTTATAGCTTGATAAAACTGGCTGACATGATTGATTGTGAATGGTGGTCACTTGGAGCGATTATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCGATGTTGACTTGTAGGAAGATTGTAAATTGGAAAGCTTATTTGAAATTTCCTGAAGAAGCTAGGCTGTCCCCAGAAGCTAAAAATCTTATTAGTAAACTTTTGTGTAATGTAAATCAGAGGCTGGGGTCAAATGGTGCAGATGAAATAAAGGCTCATCCATTCTTCAAAGGTGTTGAATGGGATAAGCTGTATCATATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGACACTCAAAATTTTGAAAAGTTTGATGAGTCTGACAGCCAAAGTCAATCATCGTCAAGATCTGGTCCATGGAGGAAGATGCTTTCATCTAAGGACTTAAATTTTGTTGGATACACATACAAGAACTTTGAAATTGTCAACGATTATCAAGTCCCTGGGATGGCTGAACTGAAAAAGAAACAATCCAAACCAAAGAGGCCAACCATCAAGTCACTTTTCGAAACACCAGAGCAAGAGTTGTCCGACACATCTGCTCAAGGAAGCTTTTTAAAGCTCTTGCCACCCCAGTTAGAGGTATCTCGCAGAGACAAGAATCTTCCTCCCAGGTCCTAA 1656 0.4052 MDSARSWLQKFQPRDRTRAAAKKKEEDSIGGNEDLNAAVDEAVLSSVTKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQNNLLNFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTSGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDAEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPVNLLLERYGHLKLSDFGLCKPLDCNTLEEKDFSVGQNVNGTPQNEERITPKRSQQEQLQHWQMNRRTLAFSCFGTIHYIPYSLIKLADMIDCEWWSLGAIMYEMLVGYPPFYSDDPMLTCRKIVNWKAYLKFPEEARLSPEAKNLISKLLCNVNQRLGSNGADEIKAHPFFKGVEWDKLYHMEAAFIPEVNDELDTQNFEKFDESDSQSQSSSRSGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKKKQSKPKRPTIKSLFETPEQELSDTSAQGSFLKLLPPQLEVSRRDKNLPPRS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5416g00001 551 ProSiteProfiles Protein kinase domain profile. 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5416g00001 551 FunFam Non-specific serine/threonine protein kinase 92 204 - -
Vium5416g00001 551 CDD STKc_NDR_like 119 482 - -
Vium5416g00001 551 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium5416g00001 551 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium5416g00001 551 MobiDBLite consensus disorder prediction 515 531 - -
Vium5416g00001 551 FunFam Non-specific serine/threonine protein kinase 315 438 - -
Vium5416g00001 551 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Vium5416g00001 551 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vium5416g00001 551 FunFam Non-specific serine/threonine protein kinase 205 272 - -
Vium5416g00001 551 SMART serkin_6 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5416g00001 551 Pfam Protein kinase domain 122 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5416g00001 551 PANTHER SERINE/THREONINE-PROTEIN KINASE 36 470 - -
Vium5416g00001 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Vium5416g00001 551 Gene3D Transferase(Phosphotransferase) domain 1 205 438 - -
Vium5416g00001 551 Coils Coil 63 83 - -
Vium5416g00001 551 Gene3D Phosphorylase Kinase; domain 1 92 447 - -
Vium5416g00001 551 MobiDBLite consensus disorder prediction 9 31 - -
Vium5416g00001 551 MobiDBLite consensus disorder prediction 1 32 - -
Vium5416g00001 551 CDD MobB_NDR_LATS-like 55 116 - -
Vium5416g00001 551 SUPERFAMILY Protein kinase-like (PK-like) 94 472 IPR011009 -
Vium5416g00001 551 MobiDBLite consensus disorder prediction 499 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5416g00001 Vium-Chr5416 2246 13967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5416g00001 1 544 AGC Kinase Gene Family AT3G23310 72.495 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vium5416g00001 Pkinase 4.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5416g00001 K08790 - gmx:100820558 966.837