Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5412g00001 ATGGAAGAGAGTGCGCAGTGCGAACAAGTTAGTGTCATTGATGAGTTGCTGCTAGGGAAGGAGCTCACAAAGAAGCTTTGTGAGCAACTATTCTCATCTTCCTCTTCCTCATCATCATCCTCCTCCTCTTCTTGTGACACAAATGAAGTCTTGATTGAGAAAATAATTTCCACCATGGAGAAGGCACTTGCCAAGGTGAATTGTATGGCTAATGTAGGAGAAAGTAAGGCCATGATGGATTCCCATTGCTCTTTCACAAATGGTAGTCCCAAAAGTGAGGTCGTGGAGCCTGAGGTTGAGCACAAACATGTCTCTAAGAAAAGAAAGACCATGCCAAGGCGGAGAGAGCAAGTGGAGGTGTGCTTGGGAACAGAAGGAAATAAGGAAGATGGCTATAGCTGGAGAAAGTATGGGCAGAAGGACATTCTTGGAGCAAAGTTTCCAAGGGGATATTACAGATGCACATATAGAAATATACAAGGATGTCTGGCCACTAAGCAAGTGCAAAAGTCAGATGAAGATCCAATGATATACGAGATAACATACATAGGAAGACACACATGCACCCAAGCAAGTCACTTGAAAAAGACAGCGGTGCCCCCATCAAAAACCAAGGTGAGAATCGAAGAAAACGAGCACCAAACCAATGAAAAGAATCAACCACAACAAGAGAAAATAGAGCAACCCCCAGAGACAATTTTCTCCTTTGGATCACAAGGTGAAGTTAAAGTAGAGGATTTGGACTTAGAAATTTTCCCATCATTTTGCTTCTCTTCTCCATCAGTAGGGTCTGAAAACGAGGAAAACAACAACATCTTCCCTTACTCCATGATCGACAACAACTTATTGGAAAACTTCTCTCCTTCATTCATGTCTACAACAACAACTTCAGAATCAGACATGTTCTTCAACTGGGAGAGCACTGGACTAGGCCAAAGCGTGCATAACTCCACTTCAGATATCACTGATATAGTTTCCACACCAACTTCAGTCACCTATTCATCAATAATGGACCTTGATATCTTCCTTGATAAGAACGATTTCGACACAGATTTTCCTATGAACACCAGAGAACTTTGCATTTGA 1086 0.4208 MEESAQCEQVSVIDELLLGKELTKKLCEQLFSSSSSSSSSSSSSCDTNEVLIEKIISTMEKALAKVNCMANVGESKAMMDSHCSFTNGSPKSEVVEPEVEHKHVSKKRKTMPRRREQVEVCLGTEGNKEDGYSWRKYGQKDILGAKFPRGYYRCTYRNIQGCLATKQVQKSDEDPMIYEITYIGRHTCTQASHLKKTAVPPSKTKVRIEENEHQTNEKNQPQQEKIEQPPETIFSFGSQGEVKVEDLDLEIFPSFCFSSPSVGSENEENNNIFPYSMIDNNLLENFSPSFMSTTTTSESDMFFNWESTGLGQSVHNSTSDITDIVSTPTSVTYSSIMDLDIFLDKNDFDTDFPMNTRELCI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5412g00001 361 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 8 309 IPR044810 GO:0003700
Vium5412g00001 361 ProSiteProfiles WRKY domain profile. 123 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium5412g00001 361 SMART WRKY_cls 128 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium5412g00001 361 FunFam WRKY transcription factor 53 114 191 - -
Vium5412g00001 361 Pfam WRKY DNA -binding domain 129 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium5412g00001 361 SUPERFAMILY WRKY DNA-binding domain 127 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium5412g00001 361 Gene3D WRKY domain 104 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium5412g00001 361 MobiDBLite consensus disorder prediction 193 230 - -
Vium5412g00001 361 MobiDBLite consensus disorder prediction 202 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5412g00001 Vium-Chr5412 16226 18873 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5412g00001 40 297 WRKY Transcription Factor Family AT5G24110 37.262 2.23e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium5412g00001 WRKY 2.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5412g00001 - - gmx:100170747 464.922