Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5411g00001 ATGAAGAAATCTTTCTACCCTAACTCCTCCCCAATGTCTCACGGCACTCGTCCCCGCTTTGATTTTCACCCACAATGGAGGCCGCACTCACACCCACATGCACATGCCGCACGCGTCCACCGTCCGCCGGAGCCTAATTTAAAGGTGAAGCCTTATTTCAAGGTGGTGCTCCGACTCGGCTTCCACCCTTCCAGCCGCGAGGACATCGAGGCCCTGATCAAAGACTGTGAGCACAAGGAGCAGTCTTTTACCTTTTACCCCGAGGACGAGGTCGCTGCCGTGCTCAGTTACAAGAATTGGGAGGAGGCGTGCGTTGCGGCCGCCTGGTTCTGGGAGACGCTGCTGTCGGAGAAGCACGATTATACGCCGGAGCTGGACTCCAACGCTTCGGTGACGGACAGTCTGGATGGTCGCCTTCGAGTGCTGTTCAGGAGGCACGTGATGAAGGTGATGGAGGGGAAGGAGGTTAAGCGGTGGGTGGAAGAGAGTAAAAGGTTGTCGAAGGAAATTGAGAGGGTTTCTCGTTTGCTCAGGAATAAGCACTTGCATATGAGCTGGTATAACAGATATATTGACCAGAGGAAAGGGCTCGTTGATGAGAAAGACCAGGTTGAAAGGAGGTTGATGGAGTTCTACTCTGCGATGGATTGTATACTGAATCATCTGGCGGAGGGAACTGACATGGTTGGTGCCAACGTGGAGGGTAGTCGGAGTGTGAATGTGTTGGAGTTTGATGGATGTTGTGATTGGAAGCGCATTCACTGCCTGATCAGAAGGGAGTGTCGGAGACTGGAGGATGGATTGCCCATTTATGCTTACAGGAAGGATATTCTTCGGGAGATACATGAGCAGAAGATGGTGGTATTAATTGGAGAGACTGGATCTGGTAAGAGTACACAGTTAGTTCAGTTTCTAGCTGATTCTGGCATTGGTGCTGATGAATCCATTGTATGCACCCAATCTCGCAAGATTGCTGCCAAATCAGTGGCTCAAAGGGTTCAGGAAGAAAGCAGCGGTTGTTATGAAGGGCAATCAATCACATGTTCTACGTTTTCATCCTTGAATGAGCTTGATTCCAGGATAATATTCACGACAGATCACTGTTTATTGCAGCACTACATGAGGAATGATAATTTGTCTGGGATCTCGTGCGTCATAGTTGATGAGGCTCACGAGAGGAGCTTAAATACAGATTTACTGATGACTTTGTTGAAGAATTTACTTTATAGGAGGGGTGAGATGCGGCTTATCATTATGTCTGCTACAGCTGATGCAAATCAGCTATCTGATTACTTTGATGGTTGTAGTATTTTTCGTGTGCAAGGGAGAAGTTTTCCAGTGGATATCAAATACGCTCCTCCTGACCATGCTGAGTATTCTGGTTCTTCTGTTGTTGCATTGGATGTTTTGGATGTTGTCAGAAAGGCAACAGAGGTTCACAGAACAGAGAAAGAGGGAACTATCCTTGCTTTTCTGACCTCTCAGATAGAAGTAGAATATGCCTGTGAGAAGTTTAAAATAATACCCTCTGCAGTTGCCCTGCCCTTACATGGAAAACTTTCATCTGATGAGCAATATCGTGTTTTTCAGAACTACCCTGGAAAGCGAAAAGTGATATTTTCAACAAATCTTGCGGAGACATCACTGACAATTCCTGGTGTTAAATATGTGATTGATTCTGGTTTAGTTAAAGACTGCAGATATGATCCTGGCAGCGGGATGAATGTACTTAAGGTGTGCTGGATTAGTAAGAGCTCTGCTGATCAACGGGCTGGTCGTGCTGGGAGGACCGAACCTGGTGTGTGCTATAGGCTGTATTCAGAAACTGATTATCAATCAATGGACCTAAATCAAGAGCCAGAGATTCGGCGAGTTCATCTTGGTGTAGCAGTTTTGAGGATCCTGGCTCTGAGAGTGAAGAATATTCAGGATTTTGATTTTGTGGATGCTCCAAGTTCTAGCTCTATTGACATAGCAGTCAGGAATCTAATTCAGTTAGGAGCAATTGAGATGAAAAACGATGGTCTTGATCTAACGCCAGAGGGTTGGTTCCTTGCCAAATTGGGAATTGAACCCAGGCTTGGTAAACTTATTCTTGGCTGTTACAAACATCGTTTGGGTAGGGAAGGTCTTGTTCTGGCTGCTGTGATGGCCAATGCTCGTACGATATTTTGTAGATTTGGCAGTGAATTTGAAAAACGAAGATCCGATTGTCTTAAAGTGCAATTTTGCCATTGTGATGGTGACCTCTTTACTCTTCTATCCGTGTACAAGGAATGGGATGCTTTGCCTTGGGGAGAAAGGAAAGAATGGTGTTTCAAAAACAGCATCAATGCTAAGTCCATGAGGAGGTGCCAAGACACAATTTTGGAGTATGAAAGTTGCCTTGAGCGTGAACATAAAATTGTTATTCCGAGTTATTGGCATTGGGACCCTTATACACCCTCTAGTTATGATAAGAACTTGAAGAGGGTTATACTGTCCTCACTTGCTGAGAATGTAGCCATGTACTCTGGCTGCAATCAACTTGGTTATGAAGTGGCGCAAACTGGGCAACATGTTCAACTGCATCCATCATGTTCATTGCTTGTTTTTGCTCAGAAACCAAATTGGGTGGTTTTTGGTGAGATTCTTTCCATCTCTAATCAATATTTGGTCTGCGTGAGCACATTTGACTTTCAATCATTATATGACCTTTGCCCAGCTCCCTTGTTTGATGTATCTAAAATGGTGGAGGGGAAGTTGCAAATGAAGACATTGTGTGGTCTTGGCCGTATTGTTCTCAAGAAATTTTGTGGAAAAGCCAACTGTAATTTGTTCGCTCTTGTTTCGCGTATAAGGAAAGCTTGTTCAGAGGAACGTATCTACATTGAAGTGAATGTTGACCAGAATGCAGTCCACTTATTTGCCACTTCAAATAATATGGATACAGCCCTTGCGTTGGTTAATGGCGCTCTAGAATTTGAGAGAAAGTTCTTACGTGCCGAATGTATTGATAAGTTTTTGTATCATGGGTCTGGTCCTTCACCTATCGCTTTGTTTGGGTCTGGTGCTGAGATAAAACATTTGGAACTTGAGAAACGTTCCTTGAGTGTTGAGGTATGTCATGCAAACATAAATGCAATTGATGACAAGGAGCTCTTAATGTTTTTAGAGAAGAATACCTCTGGTAGTATCTGTGCTGTTCACAAATCTGCAGGCAATATGAAGGATGAAGATAAGGAAAGGTGGGGCAGGATAACTTTTACATCCCCTGAATTTGTCAAAAGAGCCACTGAATTAGATGGACATGAGTTTTGTGGCTCCTCCTTGAAAATTTTCCCTTCGCAGTTGGGAGGGGATAAAACATTTTCGTACACTGATGTTAAAGCAAAAATTTGTTGGCCTCGTAGGATTAGCAGGGGATTTGCCGTAGTTAAATGTGATATAAAGGATGTCAATGATATATTGAGAGATTTCTACAACCTTGCAATAGGGGGAAGGTATGTTAGATGTGAAGTTGGCAAAAAGAGTATGGACAGTGTTGTTATAAATGGGCTTGGCAAAGACCTCTCGGAAGCTGAAATACTGGATGTGCTAAGAACTGCTACAAACAGAAGGATTTTGGATTTTTTCTTGGTGAGAGGGGATGCGGTTGAAAACCCACCATGCAGTGTTTTGGAAGAGGCACTCTTGAAGGCAATTTACCCCTCTTTGCCCAAAAGGAACCCGCACTTTAGTTCTTGCCGAGTTCAGGTGTTTGTACCTGGGCCTAAGGATGCCTTTATGACAGCTTTAATCAGTTTCGATGGAAGATTGCATTTAGAGGCAGCAAAAGCTTTGGAGCATATTGAAGGAAAGGTGTTACCTGGATGTCTATCATGGCAAAAGATAAAGTGCCAGCGGTCGTTTCAAAGCTCCTTGATATTTCCAGCACCAGTGTTTCGTGTGATTAGGGAACAACTGGATGGAGTACTTGCAAGGTTCAAGAATTTAAGAGGTCTTGAGATCGAGGAGGACAGGACATTTAATGGTTCCCACCGAGTCAAGATAACTGCGAACGCCACAAGGACAGTGGCAGATGTCAGAAGACCTCTGGAAGAACTATTGAGAGGGAAAACCATTGAGCATGACAGTCTCACTCCTGCAGTTCTCCAGCTCATGATGTCCAAGGATGGCTTTAATCTTAAAAACTCATTGGAGCAGGAGACAGGAACTTATATTCTTTTTGACAGGCAAAACTTGAATTTGCGTGTGTTTGGTTACCCAAACAAGGTTGCTTTGGCTCATGACAAGGTGATTCAATCCCTCCTTTCTCTACATGAAGAAAAGCAGTTAGAAATCCATCTGAGAGGGAGGGATTTACCTCCTGATTTAATGAAGCAAGTGATTAAGAACTTTGGACCGGATCTGCATGGACTGAAAGAAAGGGTACCTGGAGTAGATCTTAAGCTCAACATAAGACGCCATGTAATCAGTCTTAATGGTAGGAAGGAGTTGAAAACCAGGGTAGAGGAAATAATTTTTGAGATTGCTCGTTCATGCCATCATTTGGTTTGGACGTTTGCTAATGATGGTCCTAATTGCCCGATTTGCTTGTGCGAGGTTGAGGATCCATTCCAGCTTGAAGGCTGTGGTCATTTGTTCTGCCGGTTGTGTCTGGTGGAACAATGTGAATCTGCTATTAAAAACCAAGGCACCTTCCCAATATGTTGTACTCACAAGGACTGTGGAGATGTCATCCTGCTTACAGATCTGAGATCTCTCTTATTCAGTGATAAGTTGGAGGAACTTTTCAGGGCTTCTTTGGGAGCTTTCGTGACTACGAGTGGGGGAACTTACAGGTTTTGCCCTTCTCCAGACTGCCCCTCAATTTATCGAGTTGCAGATCCTGGGACTGCTGGCGAGCTATTTGTTTGTGGGGCGTGTTATTCAGAGACATGTACCAGGTGCCACTTAGAGTATCATCCTTACCTTTCATGCGAGAGATATAAAGAGTTCAAGGAAGATCCGGATTCATCTCTGATGGAGTGGCGCAGAGGCAAGGACGACGAAGTTAAGAGTTGCTTGGCGTGTGGGCATGTAATTGAGAAGGTGGATGGGTGCAACCATGTGGAGTGCAAGTGTGGAAAGCATGTGTGTTGGGTTTGCTTAGAGTTCTTCGGTGGTAGTGATGAATGTTATAGCCATTTGAGAAATGTGCACACGACTATAATATAA 5199 0.4418 MKKSFYPNSSPMSHGTRPRFDFHPQWRPHSHPHAHAARVHRPPEPNLKVKPYFKVVLRLGFHPSSREDIEALIKDCEHKEQSFTFYPEDEVAAVLSYKNWEEACVAAAWFWETLLSEKHDYTPELDSNASVTDSLDGRLRVLFRRHVMKVMEGKEVKRWVEESKRLSKEIERVSRLLRNKHLHMSWYNRYIDQRKGLVDEKDQVERRLMEFYSAMDCILNHLAEGTDMVGANVEGSRSVNVLEFDGCCDWKRIHCLIRRECRRLEDGLPIYAYRKDILREIHEQKMVVLIGETGSGKSTQLVQFLADSGIGADESIVCTQSRKIAAKSVAQRVQEESSGCYEGQSITCSTFSSLNELDSRIIFTTDHCLLQHYMRNDNLSGISCVIVDEAHERSLNTDLLMTLLKNLLYRRGEMRLIIMSATADANQLSDYFDGCSIFRVQGRSFPVDIKYAPPDHAEYSGSSVVALDVLDVVRKATEVHRTEKEGTILAFLTSQIEVEYACEKFKIIPSAVALPLHGKLSSDEQYRVFQNYPGKRKVIFSTNLAETSLTIPGVKYVIDSGLVKDCRYDPGSGMNVLKVCWISKSSADQRAGRAGRTEPGVCYRLYSETDYQSMDLNQEPEIRRVHLGVAVLRILALRVKNIQDFDFVDAPSSSSIDIAVRNLIQLGAIEMKNDGLDLTPEGWFLAKLGIEPRLGKLILGCYKHRLGREGLVLAAVMANARTIFCRFGSEFEKRRSDCLKVQFCHCDGDLFTLLSVYKEWDALPWGERKEWCFKNSINAKSMRRCQDTILEYESCLEREHKIVIPSYWHWDPYTPSSYDKNLKRVILSSLAENVAMYSGCNQLGYEVAQTGQHVQLHPSCSLLVFAQKPNWVVFGEILSISNQYLVCVSTFDFQSLYDLCPAPLFDVSKMVEGKLQMKTLCGLGRIVLKKFCGKANCNLFALVSRIRKACSEERIYIEVNVDQNAVHLFATSNNMDTALALVNGALEFERKFLRAECIDKFLYHGSGPSPIALFGSGAEIKHLELEKRSLSVEVCHANINAIDDKELLMFLEKNTSGSICAVHKSAGNMKDEDKERWGRITFTSPEFVKRATELDGHEFCGSSLKIFPSQLGGDKTFSYTDVKAKICWPRRISRGFAVVKCDIKDVNDILRDFYNLAIGGRYVRCEVGKKSMDSVVINGLGKDLSEAEILDVLRTATNRRILDFFLVRGDAVENPPCSVLEEALLKAIYPSLPKRNPHFSSCRVQVFVPGPKDAFMTALISFDGRLHLEAAKALEHIEGKVLPGCLSWQKIKCQRSFQSSLIFPAPVFRVIREQLDGVLARFKNLRGLEIEEDRTFNGSHRVKITANATRTVADVRRPLEELLRGKTIEHDSLTPAVLQLMMSKDGFNLKNSLEQETGTYILFDRQNLNLRVFGYPNKVALAHDKVIQSLLSLHEEKQLEIHLRGRDLPPDLMKQVIKNFGPDLHGLKERVPGVDLKLNIRRHVISLNGRKELKTRVEEIIFEIARSCHHLVWTFANDGPNCPICLCEVEDPFQLEGCGHLFCRLCLVEQCESAIKNQGTFPICCTHKDCGDVILLTDLRSLLFSDKLEELFRASLGAFVTTSGGTYRFCPSPDCPSIYRVADPGTAGELFVCGACYSETCTRCHLEYHPYLSCERYKEFKEDPDSSLMEWRRGKDDEVKSCLACGHVIEKVDGCNHVECKCGKHVCWVCLEFFGGSDECYSHLRNVHTTII 1732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5411g00001 1732 CDD SF2_C_RHA 445 606 - -
Vium5411g00001 1732 MobiDBLite consensus disorder prediction 1 15 - -
Vium5411g00001 1732 SMART ibrneu5 1589 1654 IPR002867 GO:0008270
Vium5411g00001 1732 SMART ibrneu5 1655 1720 IPR002867 GO:0008270
Vium5411g00001 1732 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 468 638 IPR001650 -
Vium5411g00001 1732 Pfam Helicase associated domain (HA2) 659 753 IPR007502 GO:0004386
Vium5411g00001 1732 SUPERFAMILY RING/U-box 1520 1584 - -
Vium5411g00001 1732 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1517 1599 - -
Vium5411g00001 1732 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1650 1729 - -
Vium5411g00001 1732 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1519 1598 IPR013083 -
Vium5411g00001 1732 Gene3D - 642 749 - -
Vium5411g00001 1732 FunFam RBR-type E3 ubiquitin transferase 641 747 - -
Vium5411g00001 1732 ProSitePatterns Zinc finger C2H2 type domain signature. 1707 1728 IPR013087 -
Vium5411g00001 1732 PANTHER ATP-DEPENDENT RNA HELICASE 240 904 - -
Vium5411g00001 1732 ProSitePatterns Zinc finger RING-type signature. 1538 1547 IPR017907 -
Vium5411g00001 1732 CDD Rcat_RBR_DEAH12-like 1679 1728 - -
Vium5411g00001 1732 MobiDBLite consensus disorder prediction 1 23 - -
Vium5411g00001 1732 SUPERFAMILY RING/U-box 1669 1725 - -
Vium5411g00001 1732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 774 IPR027417 -
Vium5411g00001 1732 SMART helicmild6 499 598 IPR001650 -
Vium5411g00001 1732 Gene3D - 1650 1730 - -
Vium5411g00001 1732 SUPERFAMILY RING/U-box 1605 1660 - -
Vium5411g00001 1732 CDD DEXHc_RHA-like 287 440 - -
Vium5411g00001 1732 Pfam Helicase conserved C-terminal domain 480 597 IPR001650 -
Vium5411g00001 1732 Coils Coil 156 176 - -
Vium5411g00001 1732 Pfam DEAD/DEAH box helicase 275 426 IPR011545 GO:0003676|GO:0005524
Vium5411g00001 1732 Gene3D - 444 617 IPR027417 -
Vium5411g00001 1732 Coils Coil 187 207 - -
Vium5411g00001 1732 ProSiteProfiles Zinc finger RING-type profile. 1522 1564 IPR001841 -
Vium5411g00001 1732 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 251 443 - -
Vium5411g00001 1732 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 383 392 IPR002464 -
Vium5411g00001 1732 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 444 617 - -
Vium5411g00001 1732 Gene3D - 256 443 IPR027417 -
Vium5411g00001 1732 ProSiteProfiles TRIAD supradomain profile. 1518 1727 IPR044066 -
Vium5411g00001 1732 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 822 901 IPR011709 -
Vium5411g00001 1732 Pfam IBR domain, a half RING-finger domain 1599 1654 IPR002867 GO:0008270
Vium5411g00001 1732 CDD BRcat_RBR 1606 1657 - -
Vium5411g00001 1732 SMART ultradead3 266 450 IPR014001 -
Vium5411g00001 1732 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 278 441 IPR014001 -
Vium5411g00001 1732 SMART ha2_5 658 754 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5411g00001 Vium-Chr5411 3101 10087 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5411g00001 1538 1724 ARIADNE family AT3G27710 29.474 4.25e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5411g00001 K12818 - gmx:100810008 2730.67