Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium540g00012 ATGGCACTTACTTTGCACAAGGACTCGGCCAACAACCAGATGGATTCAAGCAAGTATGTTAGGTACACACCTGAGCAGGTTGAGGCTTTGGAGAGGGTCTATGCTGAATGTCCCAAACCAAGTTCTTTGCGGAGGCAGCAACTCATCAGAGAGTGCCCCATCCTTTCCAATATCGAACCCAAACAAATCAAAGTTTGGTTTCAGAATAGAAGGTGTCGTGAGAAGCAGAGGAAGGAGGCTTCTCGGCTGCAGACAGTGAACAGAAAGCTGACTGCGATGAATAAACTGTTAATGGAAGAGAATGACCGTTTGCAGAAGCAGGTTTCTCATCTGGTTTACGAGAATGGATATATGAAGCAACAGATACAGACTGCCTCTGCGGGCACCACCACAGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGAATCAACAGCAAAACCCAACACCTCAGCATCCCAATAGGGATGCCAACAACCCAGCTGGTCTTCTCGCCATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCGATTGGAATCGTTGCTGTTTCCCGCAACTGTAGTGGTGTGGCAGCACGAGCCTGCGGCCTTGTGAGTCTAGAACCCACTAAGGTTGCTGAGATTCTGAAAGATCGACAGTCGTGGTATCGTGACTGCCGATGCGTGGAAGTATTGAGTATAGTTCCCACAGGGAATGGGGGCACCATAGAGCTCATGTACATGCAGACATACGCGCCCACAACATTGGCAGCGGCGCGGGACTTTTGGACACTGAGATACACGACAAGTTTGGAAGATGGAAGCCTTGTGATATGTGAGAGATCATTGACATCCTCAACTGGTGGTCCCACAGGGCCTCCTGCAACAACCTTTATTAGAGCTGAAATGCTTCCCAGTGGTTATCTGATTAGACCGTGTGAGGGTGGTGGATCCATTATTCACATAGTTGATCATATTGATTTAGATGTATGGAGTGTTCCTGAAGTACTGAGGCCCCTATATGAGTCATCAAAAATCTTAGCTCAGAAATTGACCATTGCTGCCTTGCAACATATACGACAGATAGCACAAGAATCGAGTGGCGAAATTCAATATGGTGGGGGTCGCCAGCCTGCTGTATTGAGAACATTTAGTCAGAGACTTTGCAGGGGATTTAATGATGCGGTGAATGGGTTTGTTGATGACGGTTGGTCGCTGATGGGTAATGATGGGGTGGAAGATGTGACCATAGCTATAAACTCTTCTCCAAACAAATTTTTGGGGTCCAATTATAATGCTTCCATGTTCCCAGCCTTTGGAGGTGGGGTCTTGTGTGCCAAGGCATCGATGCTCCTGCAGAATGTTCCACCTGCTTTGCTTGTTCGTTTTTTGAGAGAGCATCGTTCAGAATGGGCTGATTACGGGGTTGATGCATACTCTGCTGCATGCCTTAAAGCTAGTCCCTATGCAGTTCCCTGTGCAAGACCTGGTGGCTTCCCGAGCAGCCAGGTCATTTTACCTCTTGCTCATACTATTGAACATGAAGAGTTCCTGGAGGTGGTTCGCATAGAGGGTCATGCATTTTCTCCTGAGGATGTCACGTTGGCTCGTGATATGTATCTATTGCAGCTATGCAGTGGAGTTGATGAAAATGCAATTGGGGCATGTGCTCAACTTGTGTTTGCACCTATTGACGAGTCTTTTGCAGATGATGCTCTGTTGCTGCCATCTGGATTTCGTGTCATTCCATTAGATCCTAAATCAGATGGTCCAGCTGCAACTCGAACATTGGATTTGGCATCAACAATGGAAGTAGGATCTGCTAATGCTCGGCCCTCTGGTGAAGCTGATTTGAGTGGGTACAACCTTCGGTCGGTCCTTACTATTGCTTTCCAATTTACCTTCGAAAATCATACGCGGGACAATGTTGCTGCAATGGCTCGGCAGTATGTGCGTAGTGTTGTTGGATCTGTTCAGAGAGTTGCCATGGCAATTGCTCCTTCCAGGCTTAGTACTCAACTTGGGCCAAAGTCACTCCCTGGTTCCCCTGAGGCCCTTACCTTAGCACGATGGATCAGTAGAAGCTACAGGATCCACACTGGCACAGAGCTTTTTAGAGCTGAGTCCACTACAGGTGATGCAATCTTGAAGCAACTTTGGCACCATTCCGATGCAATCATGTGCTGTTCTGTGAAAACAAATGCATCTCCAGTGTTCACCTTTGCTAATCAAGCTGGGTTAGACATGCTTGAAACTACTCTAGTCGCACTTCAAGACATAATGCTTGATAAAGTGCTAGATGAATCTGGCAGGAAGATTCTTTGCTCTGAGTTCTCCAAGATAATGCAACAGGGATTTGCTTATCTACCCGCTGGGATATGTGTATCGAGTATGAATCGGCCAGTGTCTTATGAGCAGGCCATTGCATGGAAAGTCCTGAATGATGATGATTCTAATCACTGCCTAGCCTTCATGTTTATGAGTTGGTCTTTTGTATGA 2541 0.4719 MALTLHKDSANNQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMKQQIQTASAGTTTDNSCESVVMSGQNQQQNPTPQHPNRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRQSWYRDCRCVEVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPATTFIRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMGNDGVEDVTIAINSSPNKFLGSNYNASMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVTLARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKSDGPAATRTLDLASTMEVGSANARPSGEADLSGYNLRSVLTIAFQFTFENHTRDNVAAMARQYVRSVVGSVQRVAMAIAPSRLSTQLGPKSLPGSPEALTLARWISRSYRIHTGTELFRAESTTGDAILKQLWHHSDAIMCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDESGRKILCSEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIAWKVLNDDDSNHCLAFMFMSWSFV 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium540g00012 846 Pfam MEKHLA domain 701 845 IPR013978 -
Vium540g00012 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 14 846 IPR044830 GO:0003700
Vium540g00012 846 MobiDBLite consensus disorder prediction 128 160 - -
Vium540g00012 846 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Vium540g00012 846 CDD homeodomain 18 78 IPR001356 GO:0003677
Vium540g00012 846 SMART START_1 166 376 IPR002913 GO:0008289
Vium540g00012 846 Coils Coil 87 107 - -
Vium540g00012 846 SUPERFAMILY Bet v1-like 414 601 - -
Vium540g00012 846 CDD bZIP 70 109 - -
Vium540g00012 846 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Vium540g00012 846 Gene3D - 185 378 IPR023393 -
Vium540g00012 846 SMART HOX_1 15 81 IPR001356 GO:0003677
Vium540g00012 846 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Vium540g00012 846 Pfam START domain 167 374 IPR002913 GO:0008289
Vium540g00012 846 Gene3D - 9 84 - -
Vium540g00012 846 SUPERFAMILY Bet v1-like 167 378 - -
Vium540g00012 846 ProSiteProfiles START domain profile. 157 358 IPR002913 GO:0008289
Vium540g00012 846 MobiDBLite consensus disorder prediction 128 157 - -
Vium540g00012 846 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Vium540g00012 846 CDD START_ArGLABRA2_like 161 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium540g00012 Vium-Chr540 70382 75994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium540g00012 5 846 Homeobox Transcription Factor Family AT2G34710 80.024 0.0 1403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium540g00012 START 2.5e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium540g00012 K09338 - gmx:100807428 1623.99