LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium540g00007	ATGGAACTTGGAAGACCTGCCTCAAGTAGAAGAAAATTGAAAGATTTATTGCTTAAAAAAGATAATCGTAATTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGAGTTTTTATATGCTTAAAATGTTGTGGAGTGCACAGAAGCCTCGGTACTCATATATCAAAGGTATTGTCTGTGACATTGGATGACTGGTCAGAAGATGAAATAGATGCAATGATGGAGGTTGGGGGAAATGCTTCTGCTAATTCAATATACGAAGCTTATATTCCTGAAGGAGTTACAAAACCCGGACCAGATGCTGGTCATGAGCAGCGTTCAAACTTTATAAGGTCAAAGTATGAATTTCAAGAATTTCTGAAACCGAGTTTGCGCATTATATCTGGAAAAAGCAGTCTAGAATCAAGTTCTACAAAGAGTGCTAAGGATAGTTTTAGAAGTACTAGTGGTACAGAGAGACAGGAAGGTATGGTAGAATTTATTGGACTGTTGAAGGTGAAAGTAATTAAAGGCACAAATTTAGCTATCAGGGACATAAAGTCAAGTGATCCGTATGTCATTTTGAGCCTTGGCCAACAGACTGTCCAGACATCTGTAGTGAGTAGTAACCTGAATCCAGTCTGGAATGAGGAATACATGCTGTCTGTTCCAGAGCATTATGGGCAGATGAAATTGAAAGTATTTGATCATGACACATTTTCCTCTGATGATATTATGGGAGAAGCAGACATTGATCTTCAGTCTCTGATAACATCTGCTATGGCATTTGGAGATGCTGGAATGTTTGGCGATATGCAGATAGGAAAATGGTTAAAATCCGATGACAATGCACTTCTTGAGGATAGCACAGTCAATATTACTGATGGTAAGGTTAAACAAATGATGTCACTAAAGCTCCAGAATGTTGAATCTGGAGAATTAGATCTTGAACTCGAGTGGATTCCTCTTGATCAATAA	972	0.3858	MELGRPASSRRKLKDLLLKKDNRNCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDDWSEDEIDAMMEVGGNASANSIYEAYIPEGVTKPGPDAGHEQRSNFIRSKYEFQEFLKPSLRIISGKSSLESSSTKSAKDSFRSTSGTERQEGMVEFIGLLKVKVIKGTNLAIRDIKSSDPYVILSLGQQTVQTSVVSSNLNPVWNEEYMLSVPEHYGQMKLKVFDHDTFSSDDIMGEADIDLQSLITSAMAFGDAGMFGDMQIGKWLKSDDNALLEDSTVNITDGKVKQMMSLKLQNVESGELDLELEWIPLDQ	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium540g00007	323	CDD	C2_ArfGAP	166	310	-	-
	Vium540g00007	323	PRINTS	HIV Rev interacting protein signature	22	41	IPR001164	GO:0005096
	Vium540g00007	323	PRINTS	HIV Rev interacting protein signature	41	58	IPR001164	GO:0005096
	Vium540g00007	323	PRINTS	HIV Rev interacting protein signature	62	83	IPR001164	GO:0005096
	Vium540g00007	323	ProSiteProfiles	C2 domain profile.	148	264	IPR000008	-
	Vium540g00007	323	CDD	ArfGap	22	119	-	-
	Vium540g00007	323	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	163	260	IPR035892	-
	Vium540g00007	323	Pfam	Putative GTPase activating protein for Arf	11	126	IPR001164	GO:0005096
	Vium540g00007	323	Pfam	C2 domain	167	257	IPR000008	-
	Vium540g00007	323	SMART	C2_3c	168	263	IPR000008	-
	Vium540g00007	323	Gene3D	C2 domain	165	323	IPR035892	-
	Vium540g00007	323	FunFam	Arf-GAP with dual PH domain-containing protein 1	5	133	-	-
	Vium540g00007	323	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	10	124	IPR001164	GO:0005096
	Vium540g00007	323	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	5	323	IPR044518	GO:0005096\|GO:0005543
	Vium540g00007	323	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	165	323	-	-
	Vium540g00007	323	SMART	arf_gap_3	11	132	IPR001164	GO:0005096
	Vium540g00007	323	SUPERFAMILY	ArfGap/RecO-like zinc finger	10	127	IPR037278	-
	Vium540g00007	323	Gene3D	Arf GTPase activating protein	4	130	IPR038508	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium540g00007	Vium-Chr540	36946	44472	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium540g00007	3	323	C2H2 Transcription Factor Family	AT4G21160	71.818	0.0	504

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium540g00007	K12486		-	gmx:100810806	563.918