Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium540g00006 ATGGAACTTGGAAGACCTGCCTCAAGTAGAAGAAAATTGAAAGATTTATTGCTTAAAAAAGATAATCGTAATTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGAGTTTTTATATGCTTAAAATGTTGTGGAGTGCACAGAAGCCTCGGTACTCATATATCAAAGGTATTGTCTGTGACATTGGATGACTGGTCAGAAGATGAAATAGATGCAATGATGGAGGTTGGGGGAAATGCTTCTGCTAATTCAATATACGAAGCTTATATTCCTGAAGGAGTTACAAAACCCGGACCAGATGCTGGTCATGAGCAGCGTTCAAACTTTATAAGGTCAAAGTATGAATTTCAAGAATTTCTGAAACCGAGTTTGCGCATTATATCTGGAAAAAGCAGTCTAGAATCAAGTTCTACAAAGAGTGCTAAGGATAGTTTTAGAAGTACTAGTGGTACAGAGAGACAGGAAGGTATGGTAGAATTTATTGGACTGTTGAAGGTGAAAGTAATTAAAGGCACAAATTTAGCTATCAGGGACATAAAGTCAAGTGATCCGTATGTCATTTTGAGCCTTGGCCAACAGAAAGTATTTGATCATGACACATTTTCCTCTGATGATATTATGGGAGAAGCAGACATTGATCTTCAGTCTCTGATAACATCTGCTATGGCATTTGGAGATGCTGGAATGTTTGGCGATATGCAGATAGGAAAATGGTTAAAATCCGATGACAATGCACTTCTTGAGGATAGCACAGTCAATATTACTGATGGTAAGGTTAAACAAATGATGTCACTAAAGCTCCAGAATGTTGAATCTGGAGAATTAGATCTTGAACTCGAGTGGATTCCTCTTGATCAATAA 876 0.3801 MELGRPASSRRKLKDLLLKKDNRNCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDDWSEDEIDAMMEVGGNASANSIYEAYIPEGVTKPGPDAGHEQRSNFIRSKYEFQEFLKPSLRIISGKSSLESSSTKSAKDSFRSTSGTERQEGMVEFIGLLKVKVIKGTNLAIRDIKSSDPYVILSLGQQKVFDHDTFSSDDIMGEADIDLQSLITSAMAFGDAGMFGDMQIGKWLKSDDNALLEDSTVNITDGKVKQMMSLKLQNVESGELDLELEWIPLDQ 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium540g00006 291 SUPERFAMILY ArfGap/RecO-like zinc finger 10 127 IPR037278 -
Vium540g00006 291 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 5 200 IPR044518 GO:0005096|GO:0005543
Vium540g00006 291 Gene3D C2 domain 153 198 IPR035892 -
Vium540g00006 291 Pfam Putative GTPase activating protein for Arf 11 126 IPR001164 GO:0005096
Vium540g00006 291 CDD ArfGap 22 119 - -
Vium540g00006 291 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Vium540g00006 291 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Vium540g00006 291 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Vium540g00006 291 Pfam C2 domain 167 199 IPR000008 -
Vium540g00006 291 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 165 288 IPR035892 -
Vium540g00006 291 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 124 IPR001164 GO:0005096
Vium540g00006 291 SMART arf_gap_3 11 132 IPR001164 GO:0005096
Vium540g00006 291 FunFam Arf-GAP with dual PH domain-containing protein 1 5 133 - -
Vium540g00006 291 Gene3D Arf GTPase activating protein 4 130 IPR038508 -
Vium540g00006 291 Gene3D C2 domain 199 291 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium540g00006 Vium-Chr540 36944 44472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium540g00006 3 291 C2H2 Transcription Factor Family AT4G21160 65.455 1.30e-157 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium540g00006 K12486 - gmx:100810806 486.108