Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium540g00005 ATGGCTAACTATTGTCATCCTCATATCTGCCAATGTCTGAGTCGCTTGCTTGGCTTCCGGCGACATTTTCCGGTCACTGTCACCGGAAACCGACGTAAAACTGGCCAACAGTTGGTTGAGGAAGTGTTGTCTTTGGCCCAAGGCCTACTCCACCTTGGACTCTCACCTGGTCACGTGGTTGCCATCTCTGCTTACAATAGTGATAGGTATCTGGAATGGCTATTAGCCGTTGCATTTGTTGGAGGAATAGCTGCTCCTCTGAACTATAGATGGAGTTTTGAAGAGGCAAGATTAGCTTTGGCTGCAGTGAAGCCAGTGTTACTAGTGACTGACGAGAGCAGTTCCACATGGTACTCAAAACTCCAGCAAAATGATATTCCATCTCTGAAGTGGCATATTTTGTTGGATTCCGCTTCTTTAGATTTTACAAAGTGGAATGTGTTAACTCCAGAAATGATTAAGAGGCATCCTGTAAAGGTTGAACCATTTGACTACTCATGGGCACCTGAAGGCACTGTCATAATATGCTTTACTTCAGGAACTACGGGAAAGCCTAAGGGAGTCACTCTAAGTCATGGAGCTTTGATCATACAATCCTTAGCCAAGATTGCCATAGTTGGCTACAATGAGGATGATGTCTATCTGCATACTGCTCCGTTATGCCATATTGGTGGCTTGTCATCGGCCATGACCATGCTTATGGTTGGAGGTTGTCATGTCCTGATGCCAAAGTTTGATGCAGAATCAGCTGTTGGTGCCATAGAGCAATATGCAGTGACATCTTTTATCACAGTTCCTGCAATAATGGCCAGTCTGATTTCTGTAATTAGGCCCAAAGAGATTTGGAAAGGAGGTGAAACTGTCAAGAAAATACTTAATGGGGGTGGAAGCCTCTCACATGAGCTCATCAAGGACAGTAGCATATTCTTTCACAAAGCTAAGCTTATTTCAGCTTATGGAATGACAGAGACCTGCTCTTCATTGACATTCCTGGTGCTGTATGATCCAGTGGATGAAAAGACAACCATGTCCCTTCAAACATTTGGTGTGGCAGGATCCAAGTTTATTCAGCAGCCACAAGGTGTCTGTGTTGGCAAGCCTGCACCCCATGTAGAACTGAAGATAAGTGCAGATGCTTCTGGTCTAATTGGAAGAATTCTAACAAGAGGACCACATATAATGCTTAGGTATTGGGAAACTCACACAAATCCAGTAAGCCCGAACAATGAAGTCTGGCTTGACACGGGTGATATTGGATCAATTGATCATTATGGTAACTTGTGGCTTCTTGGTCGAACAAATGGTCGAATCAAGAGTGGTGGGGAGAACATTTACCCTGAAGAGTAG 1347 0.4425 MANYCHPHICQCLSRLLGFRRHFPVTVTGNRRKTGQQLVEEVLSLAQGLLHLGLSPGHVVAISAYNSDRYLEWLLAVAFVGGIAAPLNYRWSFEEARLALAAVKPVLLVTDESSSTWYSKLQQNDIPSLKWHILLDSASLDFTKWNVLTPEMIKRHPVKVEPFDYSWAPEGTVIICFTSGTTGKPKGVTLSHGALIIQSLAKIAIVGYNEDDVYLHTAPLCHIGGLSSAMTMLMVGGCHVLMPKFDAESAVGAIEQYAVTSFITVPAIMASLISVIRPKEIWKGGETVKKILNGGGSLSHELIKDSSIFFHKAKLISAYGMTETCSSLTFLVLYDPVDEKTTMSLQTFGVAGSKFIQQPQGVCVGKPAPHVELKISADASGLIGRILTRGPHIMLRYWETHTNPVSPNNEVWLDTGDIGSIDHYGNLWLLGRTNGRIKSGGENIYPEE 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium540g00005 448 Pfam AMP-binding enzyme 27 439 IPR000873 -
Vium540g00005 448 Gene3D - 19 432 IPR042099 -
Vium540g00005 448 ProSitePatterns Putative AMP-binding domain signature. 175 186 IPR020845 -
Vium540g00005 448 SUPERFAMILY Acetyl-CoA synthetase-like 8 448 - -
Vium540g00005 448 CDD AFD_class_I 175 448 - -
Vium540g00005 448 PANTHER ACYL-COA SYNTHETASE 33 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium540g00005 Vium-Chr540 28138 34877 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium540g00005 45 448 Monolignol Biosynthesis Gene Families AT3G21240 30.238 4.15e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium540g00005 K14760 - gmx:100809925 788.875