Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium540g00004 ATGGCTAACTATTGTCATCCTCATATCTGCCAATGTCTGAGTCGCTTGCTTGGCTTCCGGCGACATTTTCCGGTCACTGTCACCGGAAACCGACGTAAAACTGGCCAACAGTTGGTTGAGGAAGTGTTGTCTTTGGCCCAAGGCCTACTCCACCTTGGACTCTCACCTGGTCACGTGGTTGCCATCTCTGCTTACAATAGTGATAGGTATCTGGAATGGCTATTAGCCGTTGCATTTGTTGGAGGAATAGCTGCTCCTCTGAACTATAGATGGAGTTTTGAAGAGGCAAGATTAGCTTTGGCTGCAGTGAAGCCAGTGTTACTAGTGACTGACGAGAGCAGTTCCACATGGTACTCAAAACTCCAGCAAAATGATATTCCATCTCTGAAGTGGCATATTTTGTTGGATTCCGCTTCTTTAGATTTTACAAAGTGGAATGTGTTAACTCCAGAAATGATTAAGAGGCATCCTGTAAAGGTTGAACCATTTGACTACTCATGGGCACCTGAAGGCACTGTCATAATATGCTTTACTTCAGGAACTACGGGAAAGCCTAAGGGAGTCACTCTAAGTCATGGAGCTTTGATCATACAATCCTTAGCCAAGATTGCCATAGTTGGCTACAATGAGGATGATGTCTATCTGCATACTGCTCCGTTATGCCATATTGGTGGCTTGTCATCGGCCATGACCATGCTTATGGTTGGAGGTTGTCATGTCCTGATGCCAAAGTTTGATGCAGAATCAGCTGTTGGTGCCATAGAGCAATATGCAGTGACATCTTTTATCACAGTTCCTGCAATAATGGCCAGTCTGATTTCTGTAATTAGGCCCAAAGAGATTTGGAAAGGAGGTGAAACTGTCAAGAAAATACTTAATGGGGGTGGAAGCCTCTCACATGAGCTCATCAAGGACAGTAGCATATTCTTTCACAAAGCTAAGCTTATTTCAGCTTATGGAATGACAGAGACCTGCTCTTCATTGACATTCCTGGTGCTGTATGATCCAGTGGATGAAAAGACAACCATGTCCCTTCAAACATTTGGTGTGGCAGGATCCAAGTTTATTCAGCAGCCACAAGGTGTCTGTGTTGGCAAGCCTGCACCCCATGTAGAACTGAAGATAAGTGCAGATGCTTCTGGTCTAATTGGAAGAATTCTAACAAGAGGACCACATATAATGCTTAGGTATTGGGAAACTCACACAAATCCAGTAAGCCCGAACAATGAAGTCTGGCTTGACACGGGTGATATTGGATCAATTGATCATTATGGTAACTTGTGGCTTCTTGGTCGAACAAATGGTCGAATCAAGAGTGGTGGGGAGAACATTTACCCTGAAGAGGTTGAGGCAATTCTACTACAGCATCCAGGGATTACAAATGTTGTTGTTGTGGGAATCCCAGATGCTCACCTAACAGAGATGGTAGCAGCATGTATCCAACTTAGAGAAAATTGGCAATGGTCAGAGCAATTGACTGTTTCAGATGAAGAGTTTAACCTATCCAGAAAGAATCTCCAGCTATATTGTATAGAAAATCATTTAAGCAGGTTTAAGATACCAAAAATGTTCATTTCATGGAAAAAGCCATTTCCACTGACTACAACAGGGAAAATAAGAAGAGATCAAGTCAGAAAGGAAGTTATGTCTCAGCTACAATCTTTACATAGTAATCTTTGA 1680 0.428 MANYCHPHICQCLSRLLGFRRHFPVTVTGNRRKTGQQLVEEVLSLAQGLLHLGLSPGHVVAISAYNSDRYLEWLLAVAFVGGIAAPLNYRWSFEEARLALAAVKPVLLVTDESSSTWYSKLQQNDIPSLKWHILLDSASLDFTKWNVLTPEMIKRHPVKVEPFDYSWAPEGTVIICFTSGTTGKPKGVTLSHGALIIQSLAKIAIVGYNEDDVYLHTAPLCHIGGLSSAMTMLMVGGCHVLMPKFDAESAVGAIEQYAVTSFITVPAIMASLISVIRPKEIWKGGETVKKILNGGGSLSHELIKDSSIFFHKAKLISAYGMTETCSSLTFLVLYDPVDEKTTMSLQTFGVAGSKFIQQPQGVCVGKPAPHVELKISADASGLIGRILTRGPHIMLRYWETHTNPVSPNNEVWLDTGDIGSIDHYGNLWLLGRTNGRIKSGGENIYPEEVEAILLQHPGITNVVVVGIPDAHLTEMVAACIQLRENWQWSEQLTVSDEEFNLSRKNLQLYCIENHLSRFKIPKMFISWKKPFPLTTTGKIRRDQVRKEVMSQLQSLHSNL 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium540g00004 559 CDD AFD_class_I 175 540 - -
Vium540g00004 559 SUPERFAMILY Acetyl-CoA synthetase-like 8 553 - -
Vium540g00004 559 Gene3D - 19 432 IPR042099 -
Vium540g00004 559 Pfam AMP-binding enzyme 27 439 IPR000873 -
Vium540g00004 559 ProSitePatterns Putative AMP-binding domain signature. 175 186 IPR020845 -
Vium540g00004 559 Gene3D - 435 552 IPR045851 -
Vium540g00004 559 Pfam AMP-binding enzyme C-terminal domain 448 538 IPR025110 -
Vium540g00004 559 PANTHER ACYL-COA SYNTHETASE 33 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium540g00004 Vium-Chr540 27684 34875 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium540g00004 42 554 Monolignol Biosynthesis Gene Families AT4G19010 27.017 1.41e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium540g00004 K14760 - gmx:100809925 987.252