LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium540g00002	ATGGTGAGTGTCCTTGGGGAGGGACTCTATTTTGTTCTGATTCTTGTGGTAGTGTCTGCGACAGTGGGCACTGTGGATGCTCAAACGAAGTCTATCCTCTTAAATTGTGGTTCAAACTCTTCTTTGAATGTTGATGGTAGAAGATGGCTGGGGGACTTGGCCACCGATAACAATGTCACCCTAAGCACCCCCAGTGTTGTTGCTAACACTTCTACATTAAGTGGCAGTTCAATCTATGATCCTCTCTATAAAACAGCCAGAATTTTCACTGTTCCTTTGAATTACACAATCAAAGATGTTAAAGGAAACTACTTTGTTAGGTTCCATTTTTGCCCCTTTGCGATTGACGACTTCAATGTGAACGAGTCCTCATTTGGTGTTGTGGCCAATGGTCTGAAACTGTTATCAGAGTTTGATGTTCCTGGTAAGATATCCCACAAGAATATGAACTTGCTGAATTCTGGAAGAAATGCTAGTTCATTCTTCTTGGTAAAAGAATATATTCTGACTGTGAATGGGGATATGCTTGTGATTGAGTTCGTTCCAGACAGAAGCTCCTTTGGCTTCGTCAATGCCATTGAGATTGTCCCAGTTGTGGGTGAGCTTTTTTCTGGATCAGTTAGTAGAGTTGGTGGTGGAAACTTAAATTTGTCCGGACATGGGATGGAGACCATGTATAGGCTGAATGTCGGTGGTCCTGAGGTTCAGTCCAATCAGGATCGTGATCTTTGGAGGACATGGGAAGTGGATTCTGGTTATATGATCATAGAAAATGCTGGGTCTGGAATTAAGAACAATTCTAACATTACATATTCTTCCGTGAACGATACTTCGGTGGCTCCTCTCCTGGTGTATGAAACTGCGAGGACAATGTCCAACTCTGAAGTCTTGGACAAAAGGTTCAACATGTCATGGAAATTTGAAGTAGATCCCGACTTTGATTATTTGATCCGTATGCATTTCTGTGAGCTGGTTTATGACAGGGCAAATGAGAGAATATTTAGAATCTACATAAACAATAGGACAGCTGCGGATAATGTTGATGTGTTTGTGCGTGCTGGAGGGATGAACAGAGCATATCACTTGGACTATTTTGATCCTGTGTCATCAAAGATTGACACGGTTTGGGTTCAACTCGGTCCCGACACTGCTGCTGGTGCTGCAGGAACTGATGCTCTCTTGAATGGTCTGGAGGTTTTCAAGCTCAGTCGAAATGGAAATCTTGCACGTGTTGAGAGGTTTGACATAGGTGGTAATCCAGGGAGCAAATCAAAAGCAATGGCTGTCTGGGTGGGAGTTGGAGCAGGTGTAGCTTCTTTAGCTGTAGTTGCACTTATAGTTCTTGTATTCTGTTTCTGTAAAAGCAAGAGGAAGGAATCAAGTGATACCAAAAACAACCCTCAGGGTTGGAGACCATTGTTCCTCTATGGAGGAGCTGCTGTGAACAACTCTGTGGGTGGCAAGGGATCAGCAGGAACCCAAAAGCTATACGGATCAGTGGCCTCAGTTAGAGTTGGCAAGAGGTTTACATTGGCAGAAATCAATGCTGCAACAAACCACTTTGATGACAGTTTGGTAATTGGAGTTGGAGGCTTTGGAAAGGTGTACAAGGGGGAGATTGAAGACGGTGTTCTGGCTGCAATTAAGCGAGCCAACCCCCAATCTGAGCAAGGCCTGGCTGAATTTGAGACAGAAATTGAGATGCTGTCAAAACTCAGACACAGGCATCTGGTGTCCTTAATTGGTTTCTGTGAAGAGAAGAATGAAATGATCTTGGTTTATGAGTACATGGCCAATGGAACTCTCAGAAGCCACCTATTTGGGAGTGATCTTCCTCCCTTACCTTGGAAGCAGCGCCTAGAAGTGTGCATTGGTGCTGCAAGGGGATTGCACTACCTTCACACAGGTGCTGACCGTGGAATCATTCACAGGGATGTCAAGACAACCAATATTCTGCTAGATGAGAACTTTGTAGCCAAAATGTCTGATTTTGGATTGTCAAAAGATGGTCCAGCCTTTGAACACACCCATGTTAGCACAGCTGTGAAAGGAAGTTTTGGCTATCTAGATCCTGAGTACTTCAGAAGGCAGCAATTGACTGAGAATTCAGATGTATACTCCTTTGGAGTTGTGTTGTTTGAAGTTGTCTGTGCTAGAGCTGTGATAAACCCCACCTTGCCTAAAGATCAGATCAATCTTGCAGAATGGGCAATGAGATGGCAGAGGCAAAGATCACTTGACACAATCATTGACCCTCATCTCAGAGGAAACTATTGTCCTGAATCATTGTCCAAGTTTGGAGAGATTGCAGAAAAATGTCTTGCTGATGATGGAAAGAGCCGTCCTACCATGGGGGAGGTGTTGTGGCATTTGGAGTATGTGTTACAACTACACGAAGCATGGCTCAACAGGGACACCACAGAAACTTCCTTCTCTGGTAGTAATCATGCTTTGAGAGGTCCAAAAGATGAAGGACTAGAAATGGTACAAGACTCTTCAAGCCAAGATGAAGTTGGTTTTGATCACAAACACACAGCTGAATCTGATTCAGTCCACACAACAAGAGAATGA	2571	0.438	MVSVLGEGLYFVLILVVVSATVGTVDAQTKSILLNCGSNSSLNVDGRRWLGDLATDNNVTLSTPSVVANTSTLSGSSIYDPLYKTARIFTVPLNYTIKDVKGNYFVRFHFCPFAIDDFNVNESSFGVVANGLKLLSEFDVPGKISHKNMNLLNSGRNASSFFLVKEYILTVNGDMLVIEFVPDRSSFGFVNAIEIVPVVGELFSGSVSRVGGGNLNLSGHGMETMYRLNVGGPEVQSNQDRDLWRTWEVDSGYMIIENAGSGIKNNSNITYSSVNDTSVAPLLVYETARTMSNSEVLDKRFNMSWKFEVDPDFDYLIRMHFCELVYDRANERIFRIYINNRTAADNVDVFVRAGGMNRAYHLDYFDPVSSKIDTVWVQLGPDTAAGAAGTDALLNGLEVFKLSRNGNLARVERFDIGGNPGSKSKAMAVWVGVGAGVASLAVVALIVLVFCFCKSKRKESSDTKNNPQGWRPLFLYGGAAVNNSVGGKGSAGTQKLYGSVASVRVGKRFTLAEINAATNHFDDSLVIGVGGFGKVYKGEIEDGVLAAIKRANPQSEQGLAEFETEIEMLSKLRHRHLVSLIGFCEEKNEMILVYEYMANGTLRSHLFGSDLPPLPWKQRLEVCIGAARGLHYLHTGADRGIIHRDVKTTNILLDENFVAKMSDFGLSKDGPAFEHTHVSTAVKGSFGYLDPEYFRRQQLTENSDVYSFGVVLFEVVCARAVINPTLPKDQINLAEWAMRWQRQRSLDTIIDPHLRGNYCPESLSKFGEIAEKCLADDGKSRPTMGEVLWHLEYVLQLHEAWLNRDTTETSFSGSNHALRGPKDEGLEMVQDSSSQDEVGFDHKHTAESDSVHTTRE	856

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium540g00002	856	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	641	653	IPR008271	GO:0004672\|GO:0006468
	Vium540g00002	856	FunFam	Putative receptor-like protein kinase	31	198	-	-
	Vium540g00002	856	Gene3D	Transferase(Phosphotransferase) domain 1	597	814	-	-
	Vium540g00002	856	SUPERFAMILY	Protein kinase-like (PK-like)	499	793	IPR011009	-
	Vium540g00002	856	MobiDBLite	consensus disorder prediction	836	856	-	-
	Vium540g00002	856	Gene3D	Phosphorylase Kinase; domain 1	490	596	-	-
	Vium540g00002	856	Gene3D	-	28	198	-	-
	Vium540g00002	856	Gene3D	-	221	404	-	-
	Vium540g00002	856	CDD	STKc_IRAK	527	792	-	-
	Vium540g00002	856	FunFam	receptor-like protein kinase FERONIA	487	596	-	-
	Vium540g00002	856	PANTHER	OS07G0166700 PROTEIN	507	798	IPR045272	GO:0004714\|GO:0006468
	Vium540g00002	856	Pfam	Malectin-like domain	34	401	IPR024788	-
	Vium540g00002	856	SMART	serkin_6	521	794	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium540g00002	856	ProSitePatterns	Protein kinases ATP-binding region signature.	527	549	IPR017441	GO:0005524
	Vium540g00002	856	ProSiteProfiles	Protein kinase domain profile.	521	793	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium540g00002	856	Pfam	Protein tyrosine and serine/threonine kinase	526	788	IPR001245	GO:0004672\|GO:0006468
	Vium540g00002	856	FunFam	Receptor-like protein kinase FERONIA	597	810	-	-
	Vium540g00002	856	FunFam	Receptor-like protein kinase FERONIA	221	404	-	-
	Vium540g00002	856	MobiDBLite	consensus disorder prediction	808	856	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium540g00002	Vium-Chr540	8338	11806	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium540g00002	10	837	Receptor kinase-like Gene Family	AT1G30570	63.669	0.0	1107

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vium540g00002		Malectin_like	4.9e-30	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium540g00002	-		-	gmx:100791403	1486.09