Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium53g00001 ATGGCAACCCATCTGAATCATGTGTTCAGAACTTCAATTCTGAAGCACAAAACACAATCAGAGACCCCTTTGAGAACCTCACGAAGAACCCCAAGATTTGAAGTGATCAATGCAACAACATCTTCCACCAGCAGTGCAAGGCAGCTCATAGAGTCTGGCACAGTGAGGCCTATATTGACCAAAGATGCTTCCTCAGCAATAAACTCAGAGGGCTTTATTCTGCTTGATGTTAGGCCATATTGGGAGAGAGAGAAGGCACGTGTGACAGGGTCTTTGCACGTGCCAATCTTTGTCGAAGACAAGGATAACAGCCCTATAACTTTACTTAAGAAGTGGGTGCATTTTGGGTACATTGGGTTGTGGACTGGCCAGTACCTCACTACTGTGAATTCTGAGTTCCTTAGTCAAGTGGAAAAAGCCGTTCCTGGTAAGGACACAAAGCTTCTTGTGGCATGTGGAGAAGGATTGAGGTCAATGACAGCAGCTTCAAAACTGTGTAATGGAGGTTACAAAAATCTGGGATGGTTGGCTGGTGGATTTAATCGTTCAAAGGACAATGACTTCCCATCAGCAGAAGGAAAAGAGAAGTTGCAGTATGCTACAATTGGGGGAGTTTCTTACATATTCCTTCAGTTGCTCATATTTCTAAAGGCTGTGGGATAA 663 0.4419 MATHLNHVFRTSILKHKTQSETPLRTSRRTPRFEVINATTSSTSSARQLIESGTVRPILTKDASSAINSEGFILLDVRPYWEREKARVTGSLHVPIFVEDKDNSPITLLKKWVHFGYIGLWTGQYLTTVNSEFLSQVEKAVPGKDTKLLVACGEGLRSMTAASKLCNGGYKNLGWLAGGFNRSKDNDFPSAEGKEKLQYATIGGVSYIFLQLLIFLKAVG 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium53g00001 220 Gene3D - 56 201 IPR036873 -
Vium53g00001 220 SMART rhod_4 58 189 IPR001763 -
Vium53g00001 220 ProSiteProfiles Rhodanese domain profile. 68 192 IPR001763 -
Vium53g00001 220 Pfam Rhodanese-like domain 61 182 IPR001763 -
Vium53g00001 220 CDD RHOD 62 181 - -
Vium53g00001 220 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 10 1 219 IPR044614 -
Vium53g00001 220 FunFam Rhodanese-like domain-containing protein 10 55 199 - -
Vium53g00001 220 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 51 193 IPR036873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium53g00001 Vium-Chr53 2919 4151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium53g00001 1 207 Sulfurtransferasese or Rhodanese AT3G08920 56.522 3.19e-80 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium53g00001 - - gmx:100795945 375.941