Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5399g00005 ATGGGAAGAGGAAGGGTTCAGCTGAAGCAGATCGAGAACAAAATCAGTCGCCAAGTCACCTTCTCCAAAAGGAGAACCGGGCTGCGCAAGAAAGCTCATGAAATCTCTGTGCTCTGTGATGCTCAAGTCGCACTGATTGTCTTCAATGCCAAAGGGAAACTCTTTGACTATTCGTCTGAATCCAGTATGGAAAACGTCCTTGAAAGATATGAGAGACACGCCCACATAGGGCAACTTGTTGAAGATGGTGATGAATCACAGGGCAACTGGTCCTTGCAATGCTTCAAGCTCACCGGCAAAGTTGAAGTCTTAGAGAAAAACTTAAGGAACTTTGTTGGACAAGATCTGGATCCCTTGAGCTTGAGAGAGCTTCAGAGTTTGGAGCATCAGCTTGACACAGCTATAAAGCGCATCCGAACTAGAAAGAACCAAGTGATGAATGAATCGATCTCAGATCTGCAGAAAAAGGCAAAGCAACTGCAGGAACAAAATGGAACGCTTACAAAGAAGATTAAGGACAAAGGAAAGGCAGTGGCTGAACGTTCACAGTGTCCTCCACAGCTACAACTACATCATAGACTTGTTCCTTCTTTAACACCTGCTCAGAATTCAGGAGGAGTGGAGGAAGTGGATGAAGGAGGAACAGTTCCTAGTACGACTACTCTGATACCACCATGGATGCTGCATCAGTTTGCGAGATGA 702 0.4544 MGRGRVQLKQIENKISRQVTFSKRRTGLRKKAHEISVLCDAQVALIVFNAKGKLFDYSSESSMENVLERYERHAHIGQLVEDGDESQGNWSLQCFKLTGKVEVLEKNLRNFVGQDLDPLSLRELQSLEHQLDTAIKRIRTRKNQVMNESISDLQKKAKQLQEQNGTLTKKIKDKGKAVAERSQCPPQLQLHHRLVPSLTPAQNSGGVEEVDEGGTVPSTTTLIPPWMLHQFAR 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5399g00005 233 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium5399g00005 233 MobiDBLite consensus disorder prediction 199 221 - -
Vium5399g00005 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium5399g00005 233 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium5399g00005 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium5399g00005 233 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Vium5399g00005 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium5399g00005 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium5399g00005 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium5399g00005 233 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vium5399g00005 233 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vium5399g00005 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Vium5399g00005 233 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Vium5399g00005 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium5399g00005 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Vium5399g00005 233 Coils Coil 124 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5399g00005 Vium-Chr5399 30907 52336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5399g00005 1 184 MADS-box Gene Family AT1G26310 58.511 1.00e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium5399g00005 K-box 2.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5399g00005 K09264 - gmx:100787971 380.948