Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5396g00009 ATGAAGATTCAGTGCAACGTGTGCGAAGCTGCGGAGGCCAAGGTCCTCTGTTGCGCAGACGAAGCCGCACTTTGCTTGGAATGCGATGAAAAGGTTCACGCCGCAAACAAGCTCGCCACCAAGCACCAAAGGGTCCCCCTTTCTCTCTCTGCTTCCCACGTCCCTAAGTGTGACATATGTCAGAGGTTTTTGCTTACTGGTGTGAGAGTAGGCCTTGAAGCTACTGAGCCTGGTGCTTCCTCGTCCTCTGTCAAATCACAATCTGGGGAGAAAACATCTGATGCTAAATCTTCATCCATCTCCAGAAACGTTTCCTCCATGCCACAGCCACCAAATTTTAATGAAGTGTTTCCCTCTGAAATGGGAGGAGTTGAGGATTTTCCACCAAACAAGGTGTCTTATGGTGGCGGTTATACTGCTGGAAACATCTCACAGTGGCCCATGGAAGAATTTCTCGGGTTAAATGAATTCAGTCAGTATTACAACTATATGGATGGATCATCTAAGGCTGACAGTGGTAAACTTGGGGATTCTGACTCATCTGTTTTGAGGTCTAGTGAAGAGGAAATTGATGATGATGGCTTCTTGGGGCGTGTTCCAGATTCATCCTGGACAGTTCCTCAAATCCCTTCCCCTCCTACGGCTTCCGGATTACACTGCCCGGAACTCCGGCGATATACATCTGACAATGCTATGTTTGTTCCTGACATATGCTTTTCCGGCGAGCGGAGGCAGCCTCGCCGTGTTCTTCATCATTCTATTCATTCAAAACGGCGGAGGAACCTATAA 789 0.4816 MKIQCNVCEAAEAKVLCCADEAALCLECDEKVHAANKLATKHQRVPLSLSASHVPKCDICQRFLLTGVRVGLEATEPGASSSSVKSQSGEKTSDAKSSSISRNVSSMPQPPNFNEVFPSEMGGVEDFPPNKVSYGGGYTAGNISQWPMEEFLGLNEFSQYYNYMDGSSKADSGKLGDSDSSVLRSSEEEIDDDGFLGRVPDSSWTVPQIPSPPTASGLHCPELRRYTSDNAMFVPDICFSGERRQPRRVLHHSIHSKRRRNL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5396g00009 262 PANTHER B-BOX ZINC FINGER PROTEIN 22 61 238 - -
Vium5396g00009 262 CDD Bbox1_BBX-like 5 47 - -
Vium5396g00009 262 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vium5396g00009 262 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vium5396g00009 262 MobiDBLite consensus disorder prediction 76 113 - -
Vium5396g00009 262 MobiDBLite consensus disorder prediction 76 124 - -
Vium5396g00009 262 MobiDBLite consensus disorder prediction 168 197 - -
Vium5396g00009 262 MobiDBLite consensus disorder prediction 181 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5396g00009 Vium-Chr5396 75916 80605 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5396g00009 1 237 C2C2-CO-like Transcription Factor Family AT1G78600 40.645 8.04e-58 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5396g00009 - - gmx:100808889 325.865