Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5396g00008 ATGAAGATTCAGTGCAACGTGTGCGAAGCTGCGGAGGCCAAGGTCCTCTGTTGCGCAGACGAAGCCGCACTTTGCTTGGAATGCGATGAAAAGGTTCACGCCGCAAACAAGCTCGCCACCAAGCACCAAAGGGTCCCCCTTTCTCTCTCTGCTTCCCACGTCCCTAAGTGTGACATATGTCAGGAAATGGTTGGTTATTTCTTCTGTTTAGAGGATCGGGCTTTGCTATGTAGGAATTGTGATGTATCTATTCACACTGTTAATGCCTGTGTCTCTGGTCACCAGAGGTTTTTGCTTACTGGTGTGAGAGTAGGCCTTGAAGCTACTGAGCCTGGTGCTTCCTCGTCCTCTGTCAAATCACAATCTGGGGAGAAAACATCTGATGCTAAATCTTCATCCATCTCCAGAAACGTTTCCTCCATGCCACAGCCACCAAATTTTAATGAAGTGTTTCCCTCTGAAATGGGAGGAGTTGAGGATTTTCCACCAAACAAGGTGTCTTATGGTGGCGGTTATACTGCTGGAAACATCTCACAGTGGCCCATGGAAGAATTTCTCGGGTTAAATGAATTCAGTCAGTATTACAACTATATGGATGGATCATCTAAGGCTGACAGTGGTAAACTTGGGGATTCTGACTCATCTGTTTTGAGGTCTAGTGAAGAGGAAATTGATGATGATGGCTTCTTGGGGCGTGTTCCAGATTCATCCTGGACAGTTCCTCAAATCCCTTCCCCTCCTACGGCTTCCGGATTACACTGCCCGGAACTCCGGCGATATACATCTGACAATGCTATGTTTGTTCCTGACATATGCTTTTCCGGCGAGCGGAGGCAGCCTCGCCGTGTTCTTCATCATTCTATTCATTCAAAACGGCGGAGGAACCTATAA 891 0.4736 MKIQCNVCEAAEAKVLCCADEAALCLECDEKVHAANKLATKHQRVPLSLSASHVPKCDICQEMVGYFFCLEDRALLCRNCDVSIHTVNACVSGHQRFLLTGVRVGLEATEPGASSSSVKSQSGEKTSDAKSSSISRNVSSMPQPPNFNEVFPSEMGGVEDFPPNKVSYGGGYTAGNISQWPMEEFLGLNEFSQYYNYMDGSSKADSGKLGDSDSSVLRSSEEEIDDDGFLGRVPDSSWTVPQIPSPPTASGLHCPELRRYTSDNAMFVPDICFSGERRQPRRVLHHSIHSKRRRNL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5396g00008 296 CDD Bbox1_BBX-like 5 47 - -
Vium5396g00008 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Vium5396g00008 296 FunFam B-box zinc finger protein 22 1 93 - -
Vium5396g00008 296 Gene3D Classic Zinc Finger 1 92 - -
Vium5396g00008 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vium5396g00008 296 MobiDBLite consensus disorder prediction 215 230 - -
Vium5396g00008 296 SMART bboxneu5 52 99 IPR000315 GO:0008270
Vium5396g00008 296 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vium5396g00008 296 MobiDBLite consensus disorder prediction 202 231 - -
Vium5396g00008 296 MobiDBLite consensus disorder prediction 110 155 - -
Vium5396g00008 296 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Vium5396g00008 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 272 - -
Vium5396g00008 296 MobiDBLite consensus disorder prediction 110 147 - -
Vium5396g00008 296 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5396g00008 Vium-Chr5396 75916 80605 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5396g00008 1 271 C2C2-CO-like Transcription Factor Family AT1G78600 48.710 2.24e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium5396g00008 zf-B_box 2.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5396g00008 - - gmx:100808889 488.804