Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5396g00006 ATGAGCAGAGATTTCAAAGTTAAATTGGGTGAAGGAGGTTTTGGATCTGTATACAAAGGAAAACTTCAAAGTGGACCAGAAATAGCCATAAAGATGTTGAAAAAAACGAAAGCTGATGGAGAAGAGTTCATTAATGAAGTGGCTAGTATTGGAAGAATACATCATGTAAATGTGGTACAATCTTATGGATATTGTGCTGAAGGAGAAAATCGTGCTCTGGTTTATGAATACATGACAAATGGTTCGTTGGATAAACACATCTTCTCCAAAAAGGAAAGTGTCCCTTTAAGTCATGAGAAAACATATGAAATATCTCTTGGCATAGCTCGTGGGATTGCTTATCTTCATCAAGGCTGTGATGTGCAAATTCTACATTTTACATTAAGCCGCATAATATTCGTCTGGATGATAACTTCATCCAAAGGTTTCAGATTTCGGACTTGCCCAAAGTTGTATCCTGTTAAAGATACGTCTATTGCTTAA 483 0.3623 MSRDFKVKLGEGGFGSVYKGKLQSGPEIAIKMLKKTKADGEEFINEVASIGRIHHVNVVQSYGYCAEGENRALVYEYMTNGSLDKHIFSKKESVPLSHEKTYEISLGIARGIAYLHQGCDVQILHFTLSRIIFVWMITSSKGFRFRTCPKLYPVKDTSIA 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5396g00006 160 Gene3D Transferase(Phosphotransferase) domain 1 2 139 - -
Vium5396g00006 160 SUPERFAMILY Protein kinase-like (PK-like) 8 126 IPR011009 -
Vium5396g00006 160 ProSiteProfiles Protein kinase domain profile. 3 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5396g00006 160 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vium5396g00006 160 FunFam serine/threonine-protein kinase PBS1-like 1 77 - -
Vium5396g00006 160 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 127 IPR045874 GO:0004672
Vium5396g00006 160 Pfam Protein tyrosine and serine/threonine kinase 6 117 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5396g00006 Vium-Chr5396 53358 54302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5396g00006 1 128 Receptor kinase-like Gene Family AT1G66910 49.219 9.28e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium5396g00006 PK_Tyr_Ser-Thr 5e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5396g00006 - - vum:124840673 325.865