Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5396g00005 ATGGCCATTGCTCTTATCTGCAACCTTTTATTACTCTTTTCTCAGATTTGCAGTGCAGCTGTGACCATCACCCAGCTCGAGCCACTCTCCGACAACGGCACCACCTTGGTTTCCAGGGACGGAACCTTCGAGTTGGGTTTCTTCAGTCCAGGGAGTTCCAATAACCGCTACATCGGAATCTGGTACAAAAACATCGCTGTCAGAACAGTGGTTTGGGTGGCCAACCGCGACAATCCACTCACACACAACAACATCAATAATTCAAGAACAAACAAGTTGGTCGTAAGCCAAGAAGGAAACCTCGTACTTTTCAGCCAGAACGAGACTCTTGTTTGGTCTGCAAATGCAACGAAGAAGGTTCCGAATCCAATTGTGCAGCTTTTAGATTCTGGAAACTTGGTTCTAACAGATGCAAATGAAGAGACTGTTTTTCTGTGGCAGAGCTTTGACTTTCCTTGTGACAAGCTGTTACCAGGGATGAAGCTGGGGTGGGACTTAAAAAGTGGTCTTAACAGGAAACTAACAGCTTGGAAAGCATGGGATGATCCATCTTCAGGGGACTTCACATGGGGAGTGGAGTTAGGAAGCAACCCTGACATCGTGATGAGGAAGGGTGAAACGGAGTACTTTAGGACAGGACCCTACACTGGGAACATGTTCAGTGGGGTATACGGTCCCAGGAACAACCCACTCTACGATTACGTTTTCGTCAACGACAAAGACCAAGTGTATTTCAGATACACCCTCAAAAACGCTTCCGTCATCTCCATAATCGTCATGAACCAAACCCTTTATCTTCGCCACCGTGTTACGTGGATTCCGGAGGCCAAAGCTTGGACCATTTACCAGTCCCTCCCGATAGACAGTTGCGACGTCTACAACACTTGTGGACCCAACGGAAAGTGTGCCATTGCAGGATCACCCATTTGCCAGTGCTTGGATGGCTTCGTCCCGAAATCGTCTCGGCGGTGGAATGCCATGGATTGGAGAGAAGGGTGTGTGCGGAGTGCAGAGTGGAAGTGTGGGGTGAAAGACAGAGATGGGTTTCGCAGATTTGCGACTATGAAATTGCCCAACAGCACAGGTTCTTGGGTGAATGGAAGTATGACGCTTGAGGAATGTAGGAATAGGTGTTTGGCGAATTGTTCTTGCACTGCTTATTCGAATTTGGACACCAGAGGAGGAGGTTCTGGCTGCTCTATTTGGTTTGCGGATCTTTCTGATCTCAGACTTATAGAAAGTGGACAAGATTTGTATGTTCGAATTGCCACTTCCGATACAGACGGTAAACACGGGCGGAGGAAAAAGGTAATCGCGGTGGCTTCAGCCGTCGCATCGTTGGTGTTTCTGTTGCTATCAACATTCTGCATTTACATGACCAAACGAAGATATAAAGGGAAAATGAAAACAAAAATGGCAACGGTGGATAAAAATGAAGGAAAACAAGAAGATTTGGAGCTTCCTTTCTTTGATCTTGCTACATTGGTTAAAGTCACTAATAACTTTTCAATTGAGAATAAGCTTGGTGAGGGTGGTTTTGGACCTGTATACAAGGGTACATTAGTAGATGGACAAGAAATTGCAATCAAAAGACTTTCACGAAGTTCAGGACAAGGATTGAAAGAATTTAGAAATGAAGTCATATTGTGTGCCAAACTTCAACATAGAAATCTTGTTAAGGTTATTGGTTATTGTATTGAACAAGAAGAGAAGATGCTTCTTTATGAATACATGCCCAACAAAAGTCTTGACTTAATTATTTTTGATACATATCAAAGTAAGTTTTTAGATTGGCAAATGCGCTTTAGCATTTTGAATGCAATTGCTCGGGGACTTCTTTATCTTCATCAGGATTCTAGATTAAGAATCATACACAGAGATCTCAAATTATCTAATATTTTATTAGATAATGATATGAATCCTAAAATTTCTGATTTTGGTCTTGCGAGAATATGTGGAAGTGATCAAGTTGAAGGAAGTAGAAGCATCATAGTTGGAACCCATGGTTACATGGCACCTGAGTATGCCATTGATGGCTTGTTCTCTACGAAATCGGATGTGTTCAGCTTTGGAGTATTATTACTAGAAATTCTTAGTGGGAAGAAAAATAGAGCATTTACCTTACAAGACAACAATCATAACCTTATTGACCATGCATGGAGTTTATGGAAAGAGGGTACTCCAGAGCAATTAATCGATGCTTGTTTGGAAAACTCATATGATGTGTTTGAAGTTGTACGATGTATTCAAATTGGCCTTTTATGTCTACAACATCATCCAAATGATAGGCCAAACATGACATTGGTTGTTGTTATGTTGACCAGCAAGAATGTTTTACCTGAACCTAAGGAGCCTGGTTTCTTAATTAGAAGAATCTCAAAAGAAGAAGATTCTTCTAATAGACAAACATCTTCTTCCATCAATGAAGCATCTATCTCACTTTTAAATGCTAGATAA 2457 0.4184 MAIALICNLLLLFSQICSAAVTITQLEPLSDNGTTLVSRDGTFELGFFSPGSSNNRYIGIWYKNIAVRTVVWVANRDNPLTHNNINNSRTNKLVVSQEGNLVLFSQNETLVWSANATKKVPNPIVQLLDSGNLVLTDANEETVFLWQSFDFPCDKLLPGMKLGWDLKSGLNRKLTAWKAWDDPSSGDFTWGVELGSNPDIVMRKGETEYFRTGPYTGNMFSGVYGPRNNPLYDYVFVNDKDQVYFRYTLKNASVISIIVMNQTLYLRHRVTWIPEAKAWTIYQSLPIDSCDVYNTCGPNGKCAIAGSPICQCLDGFVPKSSRRWNAMDWREGCVRSAEWKCGVKDRDGFRRFATMKLPNSTGSWVNGSMTLEECRNRCLANCSCTAYSNLDTRGGGSGCSIWFADLSDLRLIESGQDLYVRIATSDTDGKHGRRKKVIAVASAVASLVFLLLSTFCIYMTKRRYKGKMKTKMATVDKNEGKQEDLELPFFDLATLVKVTNNFSIENKLGEGGFGPVYKGTLVDGQEIAIKRLSRSSGQGLKEFRNEVILCAKLQHRNLVKVIGYCIEQEEKMLLYEYMPNKSLDLIIFDTYQSKFLDWQMRFSILNAIARGLLYLHQDSRLRIIHRDLKLSNILLDNDMNPKISDFGLARICGSDQVEGSRSIIVGTHGYMAPEYAIDGLFSTKSDVFSFGVLLLEILSGKKNRAFTLQDNNHNLIDHAWSLWKEGTPEQLIDACLENSYDVFEVVRCIQIGLLCLQHHPNDRPNMTLVVVMLTSKNVLPEPKEPGFLIRRISKEEDSSNRQTSSSINEASISLLNAR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5396g00005 818 ProSiteProfiles EGF-like domain profile. 286 322 IPR000742 -
Vium5396g00005 818 SMART serkin_6 502 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5396g00005 818 Pfam PAN-like domain 341 409 IPR003609 -
Vium5396g00005 818 Gene3D Transferase(Phosphotransferase) domain 1 578 781 - -
Vium5396g00005 818 ProSiteProfiles Protein kinase domain profile. 502 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5396g00005 818 Gene3D Phosphorylase Kinase; domain 1 460 577 - -
Vium5396g00005 818 Pfam S-locus glycoprotein domain 210 320 IPR000858 GO:0048544
Vium5396g00005 818 ProSiteProfiles PAN/Apple domain profile. 341 423 IPR003609 -
Vium5396g00005 818 Pfam D-mannose binding lectin 69 178 IPR001480 -
Vium5396g00005 818 Gene3D - 15 149 IPR036426 -
Vium5396g00005 818 CDD STKc_IRAK 508 774 - -
Vium5396g00005 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 183 IPR036426 -
Vium5396g00005 818 SMART ntp_6 344 422 IPR003609 -
Vium5396g00005 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 16 149 - -
Vium5396g00005 818 Pfam Protein kinase domain 503 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5396g00005 818 Pfam Domain of unknown function (DUF3403) 775 818 IPR021820 GO:0004674
Vium5396g00005 818 PIRSF SRK 1 818 IPR024171 GO:0004674
Vium5396g00005 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Vium5396g00005 818 SUPERFAMILY Protein kinase-like (PK-like) 485 808 IPR011009 -
Vium5396g00005 818 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 4 764 - -
Vium5396g00005 818 CDD B_lectin 27 152 IPR001480 -
Vium5396g00005 818 ProSiteProfiles Bulb-type lectin domain profile. 20 148 IPR001480 -
Vium5396g00005 818 CDD PAN_AP_plant 344 423 - -
Vium5396g00005 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 466 577 - -
Vium5396g00005 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 578 781 - -
Vium5396g00005 818 SMART blect_4 27 152 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5396g00005 Vium-Chr5396 36977 43974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5396g00005 429 814 Receptor kinase-like Gene Family AT4G05200 48.718 7.20e-122 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium5396g00005 Pkinase 5.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5396g00005 - - gmx:100776310 1340.1