Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5396g00001 ATGGCGCTGCTGTGTGGTTCAACTTCTGTGACTCCGTTACTTTCCCAGAAGAACGTGGTCGCAGCCTCTACAAAATCTTCCTTTGGAGGCTTCCAATTGTCACTTCCAAAGCTTACATTATCTTCTTCTGTTCGAACCCTTTTACCCTCAAATTCCCGTATCCGTTGTCAACAGGAATCTACCACACCTGCCCCAGTCGAAGACCCGCGTTTCGCCTGCGTCGAGCCCGAACCCCGATTCAAAGGCCCGGACATTTGGAACAAGAGCTGGTATCCAAAAGCTGCAGATCATGTAAATACAGAGAAAACATGGTATGTTGTTGACGCTACAGATAAAGTACTTGGAAGATTAGCTTCTACAATTGCTATTCACATCCGAGGGAAAAACTTAGCAACCTACACACCCAGTGTGGACATGGGTGCATTTGTAATTGTGGTAAATGCTGAAAAGATTGCTGTATCTGGGAAAAAGAGGACTCAAAAGCTTTATAGAAGACACTCTGGAAGACCTGGTGGTATGACGGTGGAGACATTTGCTCAGCTGCAAAACAGAATTCCTGAAAGAATTATTGAACATGCTGTTCGGGGCATGCTTCCAAAAGGGAGGCTTGGCAGGAGACTATTCACCCACCTGAAGGTTTACAAGGGCCCCGATCATCCACATGCGGCACAAAAGCCCATTGACTTGCCAATAAGGGATAAGAGAATACAACTCCAGAAATAG 723 0.4606 MALLCGSTSVTPLLSQKNVVAASTKSSFGGFQLSLPKLTLSSSVRTLLPSNSRIRCQQESTTPAPVEDPRFACVEPEPRFKGPDIWNKSWYPKAADHVNTEKTWYVVDATDKVLGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGGMTVETFAQLQNRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYKGPDHPHAAQKPIDLPIRDKRIQLQK 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5396g00001 240 NCBIfam 50S ribosomal protein L13 98 229 IPR005823 GO:0003735|GO:0005840|GO:0006412
Vium5396g00001 240 SUPERFAMILY Ribosomal protein L13 98 231 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vium5396g00001 240 PANTHER RIBOSOMAL PROTEIN L13 89 235 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vium5396g00001 240 ProSitePatterns Ribosomal protein L13 signature. 194 216 IPR023563 GO:0003735|GO:0005840|GO:0006412
Vium5396g00001 240 Gene3D Ribosomal protein L13 93 236 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vium5396g00001 240 Hamap 50S ribosomal protein L13 [rplM]. 104 239 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vium5396g00001 240 FunFam 50S ribosomal protein L13 88 231 - -
Vium5396g00001 240 Pfam Ribosomal protein L13 102 220 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vium5396g00001 240 CDD Ribosomal_L13 104 217 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5396g00001 Vium-Chr5396 1683 5303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5396g00001 106 239 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 32.593 1.15e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5396g00001 K02871 - gmx:100305981 446.432