Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5395g00001 ATGATAGGTTTCTTGTTAAAGAATTCCTATCTCTCACTCAACAACTCTCGGAAACAGTACAGAAAGTCTCTTGTGCACTATATTTCATGTTTTCCACATTGTTTTTTGCTCTATCAGGCCAGTGGTAAACTACTTATTCTGGACCAACTTCTTCAGAAGTTACATTATTCTGGACACCGTGTTCTTCTTTTTGCTCAGATGACCCATACACTTGACATTTTGCAAGATTTTCTGGAGTTGCGAAAGTATTCTTATGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCTATAAGAAGTTTCAGTAGCTCATCAACTACTTCAGGCTTGACTTCTGAAGCTGAACAAAATGGAGCGTTTGTGTTTATGATCTCAACACGAGCAGGGGGAGTTGGTTTGAATCTTGTGGCTGCTGATACTGTTATATTCTATGAGCAAGATTGGAATCCTCAGGTGGACAAGCAAGCTTTACAGAGAGCACATAGAATTGGCCAGATGAACCATGTGTTGTGTATATACCTTGTTACAGAGAAGACAGTGGAGGAAGTAATTATGAGGAGGGCAGAAAGAAAATTGCTTCTGAGCATCAATGTTACTGGTGATAACATTCTCAAACATGATGATGAAGAAACATCTGAAGTTGGAACTGGAGATTTGAAATCCATCATATTTGGTTTACATATGTTAGATCCCACTGAGATTACTGACGGAAATCATAGGGATATCAACTTATCAGAAATTAGTGTTATGGCTGACAAGGTGCTTGCCTTGCGTGACAAACAAATACACGATATTGATGATAGGAAATTTGAGGTCAATCCAAGAAACATTTTACAAGGTGATGATGTTAAGGAAGGAGGTACTACTTTTTCTCACGATCTTGGTCTTGACGAGGCTTCATATCTTTCTTGGGTTAACAAGTTTGAGGAAGTGTCTAAGTCAAGTTGCAACTCAATGATGGACTGGAGGAGCAAAAGAAACTCAGAAGAGGAAAATAATCTAAAACTTGAGTCTGCAATGAAGAAGGCAGAGGAAAAGAAGCTATCCAGGTGGAAAGCTCTTGGATATCAATCATTGAATGTAAAATATCCTCTCACCCAAACGGACAATGACATTACATCAGCTACTGGGTCCGTTCATTTTGTGTATGGAGATTGTACAGCTCCATCAAATGTTTGTTCATCTGAACCAGCTATGATTTTCAGCTGTGTTGACACGTCTGGACATTGGGGCCACGGTGGAATGTTTGATGCACTGTCCAAACTTTCTACAAGCATTGGTGATGCATACGAACGGGCTTCTGAGCATGGGGATCTGCATCTTGGTGATCTGCATCTTATAAGGCTTGATGATGGTTGTCAAGAACAAGATATGACTGGAAATACTCCCAAGATGGTTGCGTTAGCTGTGGTTCAATCATATAATCCAAGGCGCAAAATTCCACGCAGTGAAATCTCACTTCCCCATTTGGAAAGCTGCTTATCTAAGGCAGCATTCTCAGCTGCTCAGAATTCTGCATCAATGCACATGCCACGAATTGGTTATCAAGATGTATCTGATCGTTCTGAGTGGTACACCATAGAACGACTCCTCAGAAAATATGCTTCCATTTACAACATCAATATATATGTATATTATTATCGAAGATCAAGTTAA 1665 0.4 MIGFLLKNSYLSLNNSRKQYRKSLVHYISCFPHCFLLYQASGKLLILDQLLQKLHYSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSSSTTSGLTSEAEQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCIYLVTEKTVEEVIMRRAERKLLLSINVTGDNILKHDDEETSEVGTGDLKSIIFGLHMLDPTEITDGNHRDINLSEISVMADKVLALRDKQIHDIDDRKFEVNPRNILQGDDVKEGGTTFSHDLGLDEASYLSWVNKFEEVSKSSCNSMMDWRSKRNSEEENNLKLESAMKKAEEKKLSRWKALGYQSLNVKYPLTQTDNDITSATGSVHFVYGDCTAPSNVCSSEPAMIFSCVDTSGHWGHGGMFDALSKLSTSIGDAYERASEHGDLHLGDLHLIRLDDGCQEQDMTGNTPKMVALAVVQSYNPRRKIPRSEISLPHLESCLSKAAFSAAQNSASMHMPRIGYQDVSDRSEWYTIERLLRKYASIYNINIYVYYYRRSS 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5395g00001 554 Gene3D Leucine Aminopeptidase, subunit E, domain 1 381 554 IPR043472 -
Vium5395g00001 554 CDD Macro_Poa1p-like_SNF2 381 539 - -
Vium5395g00001 554 CDD SF2_C_SNF 41 178 - -
Vium5395g00001 554 SUPERFAMILY Macro domain-like 382 549 IPR043472 -
Vium5395g00001 554 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 46 214 IPR001650 -
Vium5395g00001 554 SMART helicmild6 72 167 IPR001650 -
Vium5395g00001 554 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 37 553 IPR031053 GO:0003678|GO:0006281|GO:0006338
Vium5395g00001 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 217 IPR027417 -
Vium5395g00001 554 Coils Coil 329 349 - -
Vium5395g00001 554 Pfam Helicase conserved C-terminal domain 43 167 IPR001650 -
Vium5395g00001 554 Gene3D - 5 270 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5395g00001 Vium-Chr5395 24890 37544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5395g00001 38 194 RAD5 or RAD16-like Gene Family AT5G22750 35.032 2.21e-21 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5395g00001 K20092 - gmx:100797182 778.089