Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5394g00009 ATGGAAGAATTATCAGGTGTGAGAAAAGGGTGGAGTAAATTTGAAGATGAACTTCTCAAAGCATGTGTTCATGTTTACGGGGAAGGACAATGGCACCTTGTTCCTCAGAGAGCAGGGTTGAAGAGATGCAGGAAGAGTTGTCGATTGAGATGGCTAAACTATTTGAAACCAAATATCAAGCGAGGAGATTTTAGTGAAGATGAGGTTGATTTGATGATCAAATTGCATAAACTTTTGGGAAACAGGTGGTCCCTGATTGCAGGAAGACTTCCAGGAAGAACTTCAAACGACGTGAAGAATTACTGGAACACCTACACACGACGTAAATCACACTCTCAAAACAAACAAAACAACGTAAAACAGAAGGATGAGACAGAATCAACACTGAAATGTCATCAAGTTGTAAAGCCTGTGCCTCTAGCTTTATCAAAGACTTGTTGTCCCAAGTTGCTGCAAGAGAAATTTATAAATAATTCAAAAGTTGGTGTATTTGAAGAAGGTACAAGTTCTTTATCTGGGTCTGAGAATCGATTTGAAACTTTGTTAGATGAGAAGGGAAAGAATATTACAGTTAACAACAAGACATGCTTCTTTGCAGAAAAAGATGGAGTGTTTGAACAGTGGGATGAAGACCTTAGTTCAATTGCTTCTCACTTTCTTACAGAATGTGAAACTTGGACCGATATGTTTCTTGACCTGGGAATTAATTAG 711 0.3826 MEELSGVRKGXWSKFEDELLKACVHVYGEGQWHLVPQRAGLKRCRKSCRLRWLNYLKPNIKRGDFSEDEVDLMIKLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTYTRRKSHSQNKQNNVKQKDETESTLKCHQVVKPVPLALSKTCCPKLLQEKFINNSKVGVFEEGTSSLSGSENRFETLLDEKGKNITVNNKTCFFAEKDGVFEQWDEDLSSIASHFLTECETWTDMFLDLGIN 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5394g00009 237 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 153 - -
Vium5394g00009 237 SMART sant 61 109 IPR001005 -
Vium5394g00009 237 SMART sant 8 58 IPR001005 -
Vium5394g00009 237 CDD SANT 65 106 IPR001005 -
Vium5394g00009 237 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Vium5394g00009 237 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Vium5394g00009 237 Gene3D - 9 61 - -
Vium5394g00009 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Vium5394g00009 237 FunFam Myb transcription factor 9 61 - -
Vium5394g00009 237 CDD SANT 12 56 IPR001005 -
Vium5394g00009 237 FunFam Transcription factor MYB113 64 135 - -
Vium5394g00009 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Vium5394g00009 237 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Vium5394g00009 237 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Vium5394g00009 237 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vium5394g00009 237 Gene3D - 64 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5394g00009 Vium-Chr5394 39823 41129 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5394g00009 2 144 MYB Transcription Factor Family AT1G66370 58.219 1.65e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium5394g00009 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5394g00009 - K09422 gmx:100780023 330.872