Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5394g00008 ATGATGGAAGGAAGAGTATCAGGTGTGAGGAAAGGAGCATGGAGTCAAACTGAAGATGAGCTTCTCAGAGAATGCGTGCAACTCTATGGCGAAGGAAAGTGGCATCTTGTTCCTCAAAGAGCAGGGTTGAACAGATGCAGGAAGAGTTGTCGACTGAGATGGTTGAACTATTTGAAACCAAATATCAAGAGAGGGGATTTCAGTGAAGATGAGGTCGATTTGATGATCAGATTGCATAAGCTTTTGGGGAACAGATGGTCTCTGATTGCAGGAAGACTTCCGGGAAGAACTTCAAACGATGTGAAGAATTACTGGAACACCAACATGCGCCGGAAAGTACAATCTCACAACAGAGATGAGGAGAACAACAACAACAATGTGAAAGAATCCGAAAGAACTTGGAAACCCCACAAAGTGATAAAGCCTGTGCCTCGAGCTTTGGCAAAAGCATCGGCCATGGTGCATGGGAAATTGATGAGTAGTTCGAAAGTTGGTGTTAGTGAAGCCGTTTCGGCAGGGTCTGAGAATTGGTGGGAAACTCTGTTAGATGATAAGGAAGATAACATTAACAACAGCACGTGCTTCCCTGTTGCGAAAAATGGATCATTTGAGCTTTGGAATGAAGAACTTGACTCCATTCCTTCTGAGTTTTTTGCAGAAGCTGAAACATGGAACGATTTTCTTCTTAACTAA 693 0.4329 MMEGRVSGVRKGAWSQTEDELLRECVQLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTNMRRKVQSHNRDEENNNNNVKESERTWKPHKVIKPVPRALAKASAMVHGKLMSSSKVGVSEAVSAGSENWWETLLDDKEDNINNSTCFPVAKNGSFELWNEELDSIPSEFFAEAETWNDFLLN 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5394g00008 230 CDD SANT 67 109 IPR001005 -
Vium5394g00008 230 Gene3D - 11 63 - -
Vium5394g00008 230 Gene3D - 66 140 - -
Vium5394g00008 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 148 - -
Vium5394g00008 230 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Vium5394g00008 230 SUPERFAMILY Homeodomain-like 8 105 IPR009057 -
Vium5394g00008 230 SMART sant 63 111 IPR001005 -
Vium5394g00008 230 SMART sant 10 60 IPR001005 -
Vium5394g00008 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vium5394g00008 230 FunFam Transcription factor MYB113 66 139 - -
Vium5394g00008 230 Pfam Myb-like DNA-binding domain 64 107 IPR001005 -
Vium5394g00008 230 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Vium5394g00008 230 FunFam Myb transcription factor 11 63 - -
Vium5394g00008 230 MobiDBLite consensus disorder prediction 113 133 - -
Vium5394g00008 230 CDD SANT 13 58 IPR001005 -
Vium5394g00008 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 113 IPR017930 -
Vium5394g00008 230 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5394g00008 Vium-Chr5394 21031 22082 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5394g00008 8 148 MYB Transcription Factor Family AT1G66370 62.937 5.60e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium5394g00008 Myb_DNA-binding 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5394g00008 - K16166 pvu:PHAVU_008G038600g 381.719