Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5392g00003 ATGGAGTCTCAACCACTTCACATGTTTGGCCTTGCAATATCCTTTTTCCTCTTCATGATTCTGGCACTCAAAATAGGGACCAATCTCAAGAAAACTGAGTCATCTCAAAAAATACCACCGGGACCATGGAAGCTACCTGTCATAGGAAACATACACAATCTTCTTTCATCTGCACCACACAGAAAATTAAGAGACTTAGCCAAAATATATGGTCCCTTGATGCATCTCCAACTTGGGGAGGTCTTCACAATCATTGTTTCCTCACCAGAATATGCCAAGGAGATCATGAAAACCCATGATCTCATCTTTGCATCAAGGCCTACAATTCTAGCTTCTGATATAATGGCTTATGAGTCCACTGATATTATGTTTTCACCTTATGGAAAATATTGGAGACAGCTGAGAAAAATATGCACAGTGGAGCTTTTCACTCACAAGCGTGTCAACTCATTCAATCCAATAAGAGAAGAAGAACTCACCAATCTTGTCAAAATGATAGATTCACATAAAGGGTCACCCTTCAATCTCACCGAGGCACTACTTTCATCAGTGTATAACATCATTTCAAGAGCTGCGTTTGGCATGAAATGCAAAGACCAAGAAGAGTTCATATCATTGATAAACGAAGCCATGACAGTTGGATCAGGTTTTAACATAGGAGATCTGTTTCCTTCTGCTAAATGGCTTCAACTTTTGAGTGGTCTGAGGCCTAAGATTGAGAGGTTGCATCAACAACTTGATCACATACTAGAAGGTATCATCAATAAACACAAGGAGGCAAAGTCAAAAGCCAGAGAAGGCCATGGTGAAGCACAGGAAGATTTGGTAGATGTTCTGCTAAAATTCCAGGATGATAATGATAGCAACCAGGATATTTACTTAACTAACAGCAATATCAAGGCTATAATCCTGGACATCTTTGCTGCTGGAGGTGAGACTTCTGCAACTACGATAAATTGGGCAATGGCTGAGATAATAAGGGATCCACGAGTAATGAAGAAAGCACAAGCTGAGGTGAGAGAGGTATTCAAAATGAAAGGAAGGGTTGAAGGAACTTCCATGAATGAACTCATGTATTTGAAATCAATTGTGAAAGAGACCCTGAGGTTACACCCTCCAACTCCTCTTTTACTTCCAAGAAAATGTGGACAGACATGTGAGATTAATGGATATCATATACCAGTAGAAAGTAAGGTAATTGTGAATGCTTGGGCAATTGGAAGAGATCCAAACTACTGGACTGAAGCTGATAGGTTTTATCCAGAGAGATTCATTGATAACTCTATTGACTATAATGGGACAAATTTTGAGTACATTCCATTTGGTGCTGGAAGAAGAATATGCCCAGGCAGCACCTTTGGTTTAGTCAATATTGAGGTTGCCCTTGCATTTTTGCTGTATCACTTTGATTGGAAGCTTCCAAAGGGAATGAAAAATGAGGACCTGGACCTCACTGAACAATTTGGAGCAACTGTTAGAAGAAAAGAAGATCTATACTTGATACCAGTCACTTTCCATCCTTTGCTGGGAAATGGTGCAGACTGCAGAGTAGGGAAAAATCAGTTCCAGGATTAA 1575 0.3994 MESQPLHMFGLAISFFLFMILALKIGTNLKKTESSQKIPPGPWKLPVIGNIHNLLSSAPHRKLRDLAKIYGPLMHLQLGEVFTIIVSSPEYAKEIMKTHDLIFASRPTILASDIMAYESTDIMFSPYGKYWRQLRKICTVELFTHKRVNSFNPIREEELTNLVKMIDSHKGSPFNLTEALLSSVYNIISRAAFGMKCKDQEEFISLINEAMTVGSGFNIGDLFPSAKWLQLLSGLRPKIERLHQQLDHILEGIINKHKEAKSKAREGHGEAQEDLVDVLLKFQDDNDSNQDIYLTNSNIKAIILDIFAAGGETSATTINWAMAEIIRDPRVMKKAQAEVREVFKMKGRVEGTSMNELMYLKSIVKETLRLHPPTPLLLPRKCGQTCEINGYHIPVESKVIVNAWAIGRDPNYWTEADRFYPERFIDNSIDYNGTNFEYIPFGAGRRICPGSTFGLVNIEVALAFLLYHFDWKLPKGMKNEDLDLTEQFGATVRRKEDLYLIPVTFHPLLGNGADCRVGKNQFQD 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5392g00003 524 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5392g00003 524 PRINTS P450 superfamily signature 448 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5392g00003 524 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5392g00003 524 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5392g00003 524 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 441 450 IPR017972 GO:0005506|GO:0016705
Vium5392g00003 524 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5392g00003 524 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5392g00003 524 PRINTS E-class P450 group I signature 402 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5392g00003 524 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5392g00003 524 PRINTS E-class P450 group I signature 183 201 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5392g00003 524 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5392g00003 524 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5392g00003 524 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5392g00003 524 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5392g00003 524 CDD CYP71-like 70 498 - -
Vium5392g00003 524 Gene3D Cytochrome P450 31 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5392g00003 524 PANTHER OS08G0105600 PROTEIN 62 506 - -
Vium5392g00003 524 FunFam Cytochrome P450 71D8 31 502 - -
Vium5392g00003 524 SUPERFAMILY Cytochrome P450 39 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5392g00003 524 Pfam Cytochrome P450 39 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5392g00003 Vium-Chr5392 12060 14362 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5392g00003 16 505 Cytochrome P450 AT3G26300 42.857 8.15e-142 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5392g00003 - - gmx:102665189 840.106