Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5390g00001 ATGGCTATTGAAAACCATGACACCACTGTCAGAGAAATCAAGCCCAAGAACCGGAGAATCATGGGTGCTGGAGGTCCCGATGATGAGGACAATAGATGGCCACCATGGTTGAAGCCACTGCTCAAAGAGAGCTTCTTTGTTCAATGCAAGTTACATGCTGATTCTCACAAGAGTGAATGCAACATGTATTGCTTGGACTGTATGAACGGCCCTCTCTGCTCTCTCTGCCTCGCCCACCACAAGGATCACCGTGCAATCCAGATTAGGAGGTCCTCATACCATGATGTGATCAGGGTTTCTGAGATTCAGAAGGTGTTGGACATCACTGGTGTCCAAACCTACATTATCAACAGCGCAAGGGTGGTGTTTTTGAACGAGAGGCCTCAGCCAAGGCCAGGAAAAGGGGTCACAAACACATGTGAAGTCTGCGAGCGAAGCCTTCTTGATTCTTACCGCTTCTGTTCTCTTGGTTGCAAGATTGTTGGGTCATCTAAGAACCCACAGAAGAAGAAGAAGCAGTCAACGGCAATGTCATCAGATTCTGAGGATTCATACAGTAGCAACAGCGTCCATGGCCTGCAGAAAAACTGCAAAGTTCAGAGCTTCACACCGTCCACTCCACCTCCAACTTCGGTTAATTACAGAACTGCCAAGAGAAGAAAGGGAATACCGCACCGAGCCCCAATGGGGGGACTAATCATAGAGTATTAG 711 0.481 MAIENHDTTVREIKPKNRRIMGAGGPDDEDNRWPPWLKPLLKESFFVQCKLHADSHKSECNMYCLDCMNGPLCSLCLAHHKDHRAIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSYRFCSLGCKIVGSSKNPQKKKKQSTAMSSDSEDSYSSNSVHGLQKNCKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPMGGLIIEY 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5390g00001 236 Pfam PLATZ transcription factor 89 160 IPR006734 -
Vium5390g00001 236 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 27 229 - -
Vium5390g00001 236 MobiDBLite consensus disorder prediction 167 213 - -
Vium5390g00001 236 MobiDBLite consensus disorder prediction 164 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5390g00001 Vium-Chr5390 28639 31034 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vium5390g00001 PLATZ 7.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5390g00001 - - gmx:100797900 454.521