Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5385g00007 ATGGATTCCCATACCCATCATCATCAGGATTACCAGCTTCATCTCCATCAGAACCAACCCTCTTCTGGGTTGCTTCGTTTTCGCTCTGCACCCAGTTCGCTCTTTTCAAATCTCACACCTTTTGTCAGCTACGGTGCTGACACTGCTGCTTCAAGTAGCTTCCGGGAGTTGGAAGAAAGCAGCAACCAAAAGTGTTGTTCTAAGGATTTCAGTTCGATGAATTCGCATAAGGGTTATGGTGGAGGGTTGCCACCTCACTATCCAAGACATGGTTCTTCATCTGCTACTTCCAGTTCTTCTATGGAAGGGCCTTATGGGTTGGTTGGTTCAATGGGAATGGATCATGAAGCTCCTAATAAGGGCTTCGGGTCAAGTCTTCTCAGGCAGAGTAGCTCTCCTGCTGGCCTTTTCTCCAACAACAATGTTTCATTCCAAAATGGCTTTGTCACCATGAAAGGGGTTGGAAACTATGGTGGGGTGAATGACAATAATGGTGAACTCAGTCCATGTATTAGCAGGTTGAAGAATCAGATTAACTTCTCACCAAGAAATTCTTCTTCCCTGGGAATGTTGTCTCAGATCTCTGAAATAGGGAGTGAAGACATTGAGACAACTAGTCCTGATGATAATACCACTCATGGAGGTAATGATACTCAACATTTTGGCCCTGGATTCCCTTATGGTTCTTGGAATGAGACTCTACAACTGTCAGAAAATCTCAGTGGCATGAAAAGAGGGAGAAGTGACAGTGAAAAGATCTTTTCTGATGTTCAGAATGGAGAACCTGGAAACCAAGTTAATATATTATCACATCACTTGAGTTTACCGAAAACTTCAGCAGAGATGATTACAATGGAGAAGTTGCTTCAGTTTCCTGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGGTGTGCTACTCATCCTCGTAGCATTGCTGAAAGGGTGAGAAGAACTCGGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTTCCAAACATGGATAAGCAAACCAACACAGCAGACATGTTGGACTTAGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGACTCTTGGTGATAAAAGGTCAAACTGCAAGTGTTCAAACATGCAAAAGGCAGATTCATAA 1140 0.4254 MDSHTHHHQDYQLHLHQNQPSSGLLRFRSAPSSLFSNLTPFVSYGADTAASSSFRELEESSNQKCCSKDFSSMNSHKGYGGGLPPHYPRHGSSSATSSSSMEGPYGLVGSMGMDHEAPNKGFGSSLLRQSSSPAGLFSNNNVSFQNGFVTMKGVGNYGGVNDNNGELSPCISRLKNQINFSPRNSSSLGMLSQISEIGSEDIETTSPDDNTTHGGNDTQHFGPGFPYGSWNETLQLSENLSGMKRGRSDSEKIFSDVQNGEPGNQVNILSHHLSLPKTSAEMITMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLGDKRSNCKCSNMQKADS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5385g00007 379 Pfam Helix-loop-helix DNA-binding domain 310 356 IPR011598 GO:0046983
Vium5385g00007 379 FunFam Transcription factor bHLH130 family 306 375 - -
Vium5385g00007 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 368 IPR036638 GO:0046983
Vium5385g00007 379 CDD bHLH_AtbHLH_like 310 362 IPR045239 -
Vium5385g00007 379 Gene3D - 306 377 IPR036638 GO:0046983
Vium5385g00007 379 MobiDBLite consensus disorder prediction 1 22 - -
Vium5385g00007 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 355 IPR011598 GO:0046983
Vium5385g00007 379 MobiDBLite consensus disorder prediction 77 101 - -
Vium5385g00007 379 SMART finulus 311 361 IPR011598 GO:0046983
Vium5385g00007 379 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5385g00007 Vium-Chr5385 95972 99225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5385g00007 14 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 45.767 6.93e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium5385g00007 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5385g00007 - - gmx:100819605 615.92