Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5385g00004 ATGTTCCAAAACTTACACGCAATCATGGCGGAAACAGAAGCTCAAACCTACGTCCAACTCTTCTTCCTCTGGTTACTCTCCACCATCGTGTTTCGCGCCATACTCTGGTCCATGCGCCGCCATCCCCGCCGTCCACCTGGGCCACCCTCTCTCCCGATCATCGGCCACCTCCACCTGATCTCCGCCCTCCCTCACCGGTCATTCCAGGCACTGGCCACGCGCTACGGGCCCATCATGCAGATCTTCCTGGGGTCTGTTTCGTGCGTTGTGGTTTCGTCCCCGGAACTGGCGAAAGAGTTCCTGAAAACTAACGAGAGTAGCTTCTCGAACCGTTTTGTAAGTGCGGCGGTTCACCACCTGTCGTACGGATCTAAAGGCTTCCTCTTCGCGCCCTACGGAAGCTTCTGGAAGTTCATGAAGAAGATATGCATGTCGGAGCTTCTCGGTTCCCGCACCCTCGACCAGTTCCTCCACGTCAGGGAACAAGAGACTCGAAGGTTTCTCCGCGTGTTGCGGACGAAGGGGGAGGCGCGTGAAGCCGTGGATGTAGGCGGGGAGTTGTTGACTCTGACGAACAGTGTGATATCGAGAATGGTGTTGGGACGAACGTGGTGCGAGAGCGAGGGCGAGGTGGCGGAAGTGAGAAAGATGGTGGAGGACACGGTAGAGCTGGCGGGGAAGTTCAATGTGGGAGATTTCGTGTGGGTGTGCAGGTGGTTGGATTTGCAGAGAATGAAGAAGAGGGTTGAAGAGATTGTGGAGAAGTTCGATGGGATGATAGAGAGGGTGATAAGGGAGCATATGGAAGAGAGACGAAGAAGAAAGGAGAGAGGAGATGAAGAGGAAAAAGTTAGGGATTTGCTTCACATTCTCTTAGACATTCATGAAGACGAGAGCAGGGAGATGAAGTTAACCAGAGAGAATGTAAAGGCTTTTATCTTGGACATATTGATGGCAGGAACAGATACATCGGCTATAACCATGGAGTGGGCGCTAGCCGAGTTAATAAGAAACCCTAAGGTGATGGAGAAAGCGAGAGAAGAGATAGAATCAGTGAGAGGAAATAAGAGTGGAGTGATTGGAGAGTCAGATATTGTTAACCTTCCGTACATGCGAAGCATAGTGAAAGAAACCCTAAGGCTACACCCGACAACGCCGATGATTGGAAGAGAGTCATCGGAGAAGATGAAGGTTTGTGGGTATGAGATTGGAGAAAAGACGTGGTTGCTTGTGAACTTGTGGTCGATGGGCAGGGACCCTAAGGTTTGGGAAGAGGCTCTTGAGTTCAGGCCAGAGAGGTTCATGGGAGAGGAGAAAGAGTTTGATATAAGAGGACAGAAGTTTGAACTTATGCCATTTGGGACAGGGAGAAGGGTGTGTCCTGGTGCTTCACTTGCACTTCAGGTTGTGACCTCCAACCTTGCTGCTATGGTTCAGTGCTTTGATTGGAAGATTGAAGGGAGTGTTAGCATGGAAGAGAAACCATCCATGACCCTTCCAAGGGCACATCCTTTGCTCTGTGTCCCTGTGCCTCGATTCTCATTTTCCTTCTAA 1554 0.5097 MFQNLHAIMAETEAQTYVQLFFLWLLSTIVFRAILWSMRRHPRRPPGPPSLPIIGHLHLISALPHRSFQALATRYGPIMQIFLGSVSCVVVSSPELAKEFLKTNESSFSNRFVSAAVHHLSYGSKGFLFAPYGSFWKFMKKICMSELLGSRTLDQFLHVREQETRRFLRVLRTKGEAREAVDVGGELLTLTNSVISRMVLGRTWCESEGEVAEVRKMVEDTVELAGKFNVGDFVWVCRWLDLQRMKKRVEEIVEKFDGMIERVIREHMEERRRRKERGDEEEKVRDLLHILLDIHEDESREMKLTRENVKAFILDILMAGTDTSAITMEWALAELIRNPKVMEKAREEIESVRGNKSGVIGESDIVNLPYMRSIVKETLRLHPTTPMIGRESSEKMKVCGYEIGEKTWLLVNLWSMGRDPKVWEEALEFRPERFMGEEKEFDIRGQKFELMPFGTGRRVCPGASLALQVVTSNLAAMVQCFDWKIEGSVSMEEKPSMTLPRAHPLLCVPVPRFSFSF 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5385g00004 517 PRINTS P450 superfamily signature 460 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5385g00004 517 PRINTS P450 superfamily signature 319 336 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5385g00004 517 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5385g00004 517 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5385g00004 517 Gene3D Cytochrome P450 30 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5385g00004 517 FunFam Cytochrome P450 family protein 36 507 - -
Vium5385g00004 517 SUPERFAMILY Cytochrome P450 38 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5385g00004 517 PRINTS E-class P450 group I signature 96 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5385g00004 517 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5385g00004 517 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5385g00004 517 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5385g00004 517 PRINTS E-class P450 group I signature 190 208 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5385g00004 517 PRINTS E-class P450 group I signature 412 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5385g00004 517 PRINTS E-class P450 group I signature 328 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5385g00004 517 PRINTS E-class P450 group I signature 308 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5385g00004 517 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5385g00004 517 Coils Coil 242 262 - -
Vium5385g00004 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506|GO:0016705
Vium5385g00004 517 PANTHER CYTOCHROME P450 98A9 21 512 - -
Vium5385g00004 517 Pfam Cytochrome P450 45 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5385g00004 Vium-Chr5385 45632 48998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5385g00004 12 512 Cytochrome P450 AT5G06900 47.421 1.73e-161 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5385g00004 K24188 - gmx:100805931 720.694