Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5385g00002 ATGAGGCCACCACCAACTCTCAATATTTTCCCATCTCAGCCTATGCACGCAGTGCCACCACCCAATTCCAAGGTTAGCATGGAGTTACCCTCCACGCACACCAGTGGCTCCAAGAGACCAGGGTCATCCATAACCAAGCCCAACCCTCACACCGAATTAGCTCCATCTGCACCTGAACAACCCAAAGCTGTTAAGCGAGAGGGAAATCGCAAGGGAGCAACCTCAAGTTCTGAGCAGGAAGCACCCAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCAAGAAAAAGCAGGCTCAGGAAAAAGGCGTACGTTCAGCAGCTAGAGTCAAGTAGAATTAAGCTTAATCAGCTAGAACAAGAGTTGCAGCGTGCAAGAGCTCAAGGCATATTAATGGGTGGAAATGCCCTTCTGGGAGGTGAGCAAGGTTTTCCTATGGCTATGACTGGCATTAGCTCAGAGGCTGCAATGTTTGACGTGGAATATGCTAGATGGTTAGAGGAGCACCAGCGTATAGTGTGCGAACTAAGAGGTGCAGTGCAAGAACACCTCCATGAAAACGAGCTTCGGTTATATGTGGACAGTTGTTTGGCTCACTACGACCAAGTAATGAACCTGAAGAGCATAGTGGCCAAAACAGACGTATTCCACCTTGTTTTTGGCATGTGGAAGACCCCAGCGGAGCGTTGCTTCATGTGGATTGGTGGTTTCAGACCCTCTGAACTCATCAAGATTATTCTGGGTCAAATCGAGCCTCTCACGGAGCAACAAATACTTGGGATATGTGGGTTGCAACAATCCACACAGGAGGCAGAAGAGGCTCTTTCACAAGGACTCGATGCCCTAAACCAATCTCTCTCGGACACTTTAACATCGGACTCTCTGTGGTGTCCTCCAAATATGACTAACTACATGGGACAGATGGCTGTGGCAATGAACAAACTCTCCACTCTTGAAAGTTTTGCGAGACAGGCTGATAATCTGAGGCACCAAACCATTCACCGTCTGCAGCAACTTCTAACCACGCGCCAGGCAGCAAGGTGTTTGGTGGCCATTTCTGAGTACTTCCATCGTCTTCGAGCTCTCAGTTCTCTCTGGTTCACGCGCCCTCGCCAAGACTAG 1140 0.4904 MRPPPTLNIFPSQPMHAVPPPNSKVSMELPSTHTSGSKRPGSSITKPNPHTELAPSAPEQPKAVKREGNRKGATSSSEQEAPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQLEQELQRARAQGILMGGNALLGGEQGFPMAMTGISSEAAMFDVEYARWLEEHQRIVCELRGAVQEHLHENELRLYVDSCLAHYDQVMNLKSIVAKTDVFHLVFGMWKTPAERCFMWIGGFRPSELIKIILGQIEPLTEQQILGICGLQQSTQEAEEALSQGLDALNQSLSDTLTSDSLWCPPNMTNYMGQMAVAMNKLSTLESFARQADNLRHQTIHRLQQLLTTRQAARCLVAISEYFHRLRALSSLWFTRPRQD 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5385g00002 379 SMART brlzneu 84 150 IPR004827 GO:0003700|GO:0006355
Vium5385g00002 379 Gene3D - 87 137 - -
Vium5385g00002 379 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 86 130 IPR004827 GO:0003700|GO:0006355
Vium5385g00002 379 Pfam Seed dormancy control 179 252 IPR025422 GO:0006351|GO:0043565
Vium5385g00002 379 MobiDBLite consensus disorder prediction 1 91 - -
Vium5385g00002 379 ProSiteProfiles DOG1 domain profile. 161 375 IPR025422 GO:0006351|GO:0043565
Vium5385g00002 379 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 91 106 IPR004827 GO:0003700|GO:0006355
Vium5385g00002 379 Coils Coil 107 134 - -
Vium5385g00002 379 Pfam bZIP transcription factor 88 126 IPR004827 GO:0003700|GO:0006355
Vium5385g00002 379 MobiDBLite consensus disorder prediction 25 50 - -
Vium5385g00002 379 SUPERFAMILY Leucine zipper domain 88 130 IPR046347 GO:0003700|GO:0006355
Vium5385g00002 379 CDD bZIP_HBP1b-like 88 140 - -
Vium5385g00002 379 MobiDBLite consensus disorder prediction 1 18 - -
Vium5385g00002 379 FunFam BZIP family transcription factor 87 136 - -
Vium5385g00002 379 PANTHER TRANSCRIPTION FACTOR TGA9 14 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5385g00002 Vium-Chr5385 13562 19470 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5385g00002 1 379 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 66.582 0.0 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium5385g00002 DOG1 2.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5385g00002 K14431 - gmx:100800059 683.715