Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5385g00001 ATGGCTTCTTCAAGTGTTAAGAGCACCAACTCAACAACTCAACTTGAACCACTCCCCCCACATCTTCATCATCAACAACCACCACATCATTTTCATCATCATCAAATACCAGACCAACAAATCTCTTTTGGGATGATGCCATCTTCCTCATCACACTCTATCCCTGCAAATTACTTAAGCAAAGATTCTGGAGCTTATGATCTGGGAGAATTGGATCAAGCCTTCTTTTTATATCTTGACGGTCAGGCTGACCCTTCTAGTGTTCAAGACCAAAGACAGAACTCATCATCAGGAATGAGGCCACCACCAACTCTCAATATTTTCCCATCTCAGCCTATGCACGCAGTGCCACCACCCAATTCCAAGGTTAGCATGGAGTTACCCTCCACGCACACCAGTGGCTCCAAGAGACCAGGGTCATCCATAACCAAGCCCAACCCTCACACCGAATTAGCTCCATCTGCACCTGAACAACCCAAAGCTGTTAAGCGAGAGGGAAATCGCAAGGGAGCAACCTCAAGTTCTGAGCAGGAAGCACCCAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCAAGAAAAAGCAGGCTCAGGAAAAAGGCGTACGTTCAGCAGCTAGAGTCAAGTAGAATTAAGCTTAATCAGCTAGAACAAGAGTTGCAGCGTGCAAGAGCTCAAGGCATATTAATGGGTGGAAATGCCCTTCTGGGAGGTGAGCAAGGTTTTCCTATGGCTATGACTGGCATTAGCTCAGAGGCTGCAATGTTTGACGTGGAATATGCTAGATGGTTAGAGGAGCACCAGCGTATAGTGTGCGAACTAAGAGGTGCAGTGCAAGAACACCTCCATGAAAACGAGCTTCGGTTATATGTGGACAGTTGTTTGGCTCACTACGACCAAGTAATGAACCTGAAGAGCATAGTGGCCAAAACAGACGTATTCCACCTTGTTTTTGGCATGTGGAAGACCCCAGCGGAGCGTTGCTTCATGTGGATTGGTGGTTTCAGACCCTCTGAACTCATCAAGATTATTCTGGGTCAAATCGAGCCTCTCACGGAGCAACAAATACTTGGGATATGTGGGTTGCAACAATCCACACAGGAGGCAGAAGAGGCTCTTTCACAAGGACTCGATGCCCTAAACCAATCTCTCTCGGACACTTTAACATCGGACTCTCTGTGGTGTCCTCCAAATATGACTAACTACATGGGACAGATGGCTGTGGCAATGAACAAACTCTCCACTCTTGAAAGTTTTGCGAGACAGGCTGATAATCTGAGGCACCAAACCATTCACCGTCTGCAGCAACTTCTAACCACGCGCCAGGCAGCAAGGTGTTTGGTGGCCATTTCTGAGTACTTCCATCGTCTTCGAGCTCTCAGTTCTCTCTGGTTCACGCGCCCTCGCCAAGACTAG 1434 0.4756 MASSSVKSTNSTTQLEPLPPHLHHQQPPHHFHHHQIPDQQISFGMMPSSSSHSIPANYLSKDSGAYDLGELDQAFFLYLDGQADPSSVQDQRQNSSSGMRPPPTLNIFPSQPMHAVPPPNSKVSMELPSTHTSGSKRPGSSITKPNPHTELAPSAPEQPKAVKREGNRKGATSSSEQEAPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQLEQELQRARAQGILMGGNALLGGEQGFPMAMTGISSEAAMFDVEYARWLEEHQRIVCELRGAVQEHLHENELRLYVDSCLAHYDQVMNLKSIVAKTDVFHLVFGMWKTPAERCFMWIGGFRPSELIKIILGQIEPLTEQQILGICGLQQSTQEAEEALSQGLDALNQSLSDTLTSDSLWCPPNMTNYMGQMAVAMNKLSTLESFARQADNLRHQTIHRLQQLLTTRQAARCLVAISEYFHRLRALSSLWFTRPRQD 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5385g00001 477 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 189 204 IPR004827 GO:0003700|GO:0006355
Vium5385g00001 477 Pfam Seed dormancy control 277 350 IPR025422 GO:0006351|GO:0043565
Vium5385g00001 477 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 184 228 IPR004827 GO:0003700|GO:0006355
Vium5385g00001 477 SMART brlzneu 182 248 IPR004827 GO:0003700|GO:0006355
Vium5385g00001 477 Coils Coil 205 232 - -
Vium5385g00001 477 PANTHER TRANSCRIPTION FACTOR TGA9 95 476 - -
Vium5385g00001 477 MobiDBLite consensus disorder prediction 1 34 - -
Vium5385g00001 477 MobiDBLite consensus disorder prediction 123 148 - -
Vium5385g00001 477 ProSiteProfiles DOG1 domain profile. 259 473 IPR025422 GO:0006351|GO:0043565
Vium5385g00001 477 Gene3D - 185 235 - -
Vium5385g00001 477 MobiDBLite consensus disorder prediction 84 104 - -
Vium5385g00001 477 MobiDBLite consensus disorder prediction 1 19 - -
Vium5385g00001 477 FunFam BZIP family transcription factor 185 234 - -
Vium5385g00001 477 CDD bZIP_HBP1b-like 186 238 - -
Vium5385g00001 477 Pfam bZIP transcription factor 186 224 IPR004827 GO:0003700|GO:0006355
Vium5385g00001 477 MobiDBLite consensus disorder prediction 84 189 - -
Vium5385g00001 477 SUPERFAMILY Leucine zipper domain 186 228 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5385g00001 Vium-Chr5385 12700 19470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5385g00001 56 477 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 62.896 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium5385g00001 DOG1 3.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5385g00001 K14431 - gmx:100800059 809.675