Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium537g00001 ATGGAACTTTATGATAATGATTTCTTGGAGGAATCAATGGCCCTAAGAAGAGAACCATGGGATACCAATCCGTGTTCACAAGAAAACCAGCTTTTCTCTAATGCTTGGAGTTTTGATTGTTTTGATCAAAACTATCAAGCTTTTCCTTCAAATTCTTTCTCTTTGCAAGAAGTGCCTCAGAGTTACAACTTCGACCACACCTTCAATGAAATCTACAGTTCCTTATTTAATGAGTTTTCTGCACCTCAGATTGTAGATTCATCTTATAGCACCCTCGATGCTTCACATATTAGCACCCCTTCATTTGTTCCTCATGAAGATTATCCATTGTCTTTGATAGAAGAAGAAGATCCGGGTTTGCTTGGGGAAGAGCTTCATTGTTTGGACCTTCAAGCAACATGCAAAATGGAGCCAAGCCATTCCCCTGAAATGCCTGTTTTCAACACAGATTCTTGTGTTGAAAGAAAGACTAGAGCAAAGAAGCTTCAGGGGCAGCCTTCCAAGAACCTAATGGCAGAGAGAAGAAGAAGGAAGAGATTAAACGACAGACTCTCCATGCTAAGATCAATTGTCCCAAAGATAAGTAAGATGGACAGAACAGCTATTCTTGGAGACACTATTGATTATATGAAAGAGCTCTTGGAAAAGATTAACACTTTGAAGCAAGAAATAGAGGTGGATTCCAACACTGCTACCATTTTCAAGGATTTAAAGCCAAACGAAATCTTAGTAAGAAATTCTCCCAAGTTTGATGTGGAGAGGAGAAATGCCAATACAAGGGTGGAGATCTGCTGTGCTGGGAAGCCAGGCTTGCTGCTGTCTACGGTAAACACATTGGAAACACTAGGCCTGGAGATCCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAGTGCAAGCTTCTTGTTCAGAGGAACTGCAGCAGAAGAAAATTCTGAGTTCAGAAGATATAAAACAAGCACTGTTTAGAAGTGCAGGATATGGAGGAAGATGTTTGTGA 1002 0.4012 MELYDNDFLEESMALRREPWDTNPCSQENQLFSNAWSFDCFDQNYQAFPSNSFSLQEVPQSYNFDHTFNEIYSSLFNEFSAPQIVDSSYSTLDASHISTPSFVPHEDYPLSLIEEEDPGLLGEELHCLDLQATCKMEPSHSPEMPVFNTDSCVERKTRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDTIDYMKELLEKINTLKQEIEVDSNTATIFKDLKPNEILVRNSPKFDVERRNANTRVEICCAGKPGLLLSTVNTLETLGLEIQQCVISCFNDFTVQASCSEELQQKKILSSEDIKQALFRSAGYGGRCL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium537g00001 333 Pfam Helix-loop-helix DNA-binding domain 170 213 IPR011598 GO:0046983
Vium537g00001 333 Gene3D - 153 228 IPR036638 GO:0046983
Vium537g00001 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Vium537g00001 333 Coils Coil 210 230 - -
Vium537g00001 333 CDD ACT_UUR-ACR-like 259 322 - -
Vium537g00001 333 SMART finulus 170 219 IPR011598 GO:0046983
Vium537g00001 333 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 29 328 - -
Vium537g00001 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 226 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium537g00001 Vium-Chr537 36886 39380 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium537g00001 29 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 47.634 2.93e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium537g00001 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium537g00001 - - vra:106764382 635.95