Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5378g00002 ATGGATTTGGACGATTTCCGATCCATATTGGACACCTCGGGCGTCGACGTATGGATGTTCATCGACGCCGCAATCGCCGTCGCCTCCGCGGACTGCGCAGCCGAATTGAAGCGCCGCCGCGACTCCATCGTGGAGAGTCTCTACTCCGCCACGGCCGCGCCTCCGCAGTGCCGCAATTGTGGCGACGGCCACCGCCTCAGGCCCAACGGCCACCAAGTCGCGAAGCAGAACAGCCCTAGCCCTAGCCCCGAACGGCAACCTCAGCGACGCGCCGCCGCCGCTACAGCCAATTCCCCTGCGACGCCGCAGTCTCTGGAAAACGATGACGGCGGCGAGGAGTTGGATCCTTACGGTGGTTTGTTCGACGACGAACAGAAGAAGATTCTAGATATTAAAGAGCAACTCGAAGAGCCTGACCAGTCTGAAGATTCCTTGGTGGAGTTGCTGCAAAGCCTTGCGGACATGGATATTACATTCCAAGCTTTGAAGGAAACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGACGTTCGTCGATTGGTGAAGCTGCTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACAGGGAGGAAGCAACACTCTTATGGCTGATGGAGACTCGCCTGTGCAGAAAACCACCCAAAATGGGCATCATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGGAGTTCAGGTTCTGACCGTAACAACTCTGAAGCAGAACACAAACCGAAGGTGATTCCGCGCAGTGAAGCTCGGCCAAAACCCACGCCTGCACCGTCAGTTTCAACCCCTGCTTCCGCTTCTCAAAACAGACAAAGGCAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCTGCCAGAAGGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAGGCAAAGAACTATTCAGGTTATGGACATCAATGAGTTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGGAAGAACAAAGGTGGTGGTGGTTCTCAGGGAAGGCACTGGTGA 1062 0.5377 MDLDDFRSILDTSGVDVWMFIDAAIAVASADCAAELKRRRDSIVESLYSATAAPPQCRNCGDGHRLRPNGHQVAKQNSPSPSPERQPQRRAAAATANSPATPQSLENDDGGEELDPYGGLFDDEQKKILDIKEQLEEPDQSEDSLVELLQSLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLNPQGGSNTLMADGDSPVQKTTQNGHHHQIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVIPRSEARPKPTPAPSVSTPASASQNRQRQSSFDAERLASARRRLQENYKEAENAKRQRTIQVMDINELPKSKPKNAFFGKNKGGGGSQGRHW 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5378g00002 353 SMART TFS2_5 128 199 IPR003617 GO:0005634
Vium5378g00002 353 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 126 210 IPR035441 -
Vium5378g00002 353 MobiDBLite consensus disorder prediction 277 295 - -
Vium5378g00002 353 MobiDBLite consensus disorder prediction 71 105 - -
Vium5378g00002 353 CDD TFIIS_I 125 198 - -
Vium5378g00002 353 MobiDBLite consensus disorder prediction 204 353 - -
Vium5378g00002 353 Pfam TFIIS helical bundle-like domain 148 197 IPR017923 -
Vium5378g00002 353 Coils Coil 295 322 - -
Vium5378g00002 353 ProSiteProfiles TFIIS N-terminal domain profile. 123 200 IPR017923 -
Vium5378g00002 353 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 353 IPR044790 -
Vium5378g00002 353 MobiDBLite consensus disorder prediction 53 119 - -
Vium5378g00002 353 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 122 209 IPR035441 -
Vium5378g00002 353 MobiDBLite consensus disorder prediction 204 231 - -
Vium5378g00002 353 MobiDBLite consensus disorder prediction 296 318 - -
Vium5378g00002 353 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5378g00002 Vium-Chr5378 31891 34509 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vium5378g00002 Med26 3.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5378g00002 - - gmx:100804034 546.584