Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5378g00001 ATGGATTTGGACGATTTCCGATCCATATTGGACACCTCGGGCGTCGACGTATGGATGTTCATCGACGCCGCAATCGCCGTCGCCTCCGCGGACTGCGCAGCCGAATTGAAGCGCCGCCGCGACTCCATCGTGGAGAGTCTCTACTCCGCCACGGCCGCGCCTCCGCAGTGCCGCAATTGTGGCGACGGCCACCGCCTCAGGCCCAACGGCCACCAAGTCGCGAAGCAGAACAGCCCTAGCCCTAGCCCCGAACGGCAACCTCAGCGACGCGCCGCCGCCGCTACAGCCAATTCCCCTGCGACGCCGCAGTCTCTGGAAAACGATGACGGCGGCGAGGAGTTGGATCCTTACGGTGGTTTGTTCGACGACGAACAGAAGAAGATTCTAGATATTAAAGAGCAACTCGAAGAGCCTGACCAGTCTGAAGATTCCTTGGTGGAGTTGCTGCAAAGCCTTGCGGACATGGATATTACATTCCAAGCTTTGAAGGAAACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGACGTTCGTCGATTGGTGAAGCTGCTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACAGGGAGGAAGCAACACTCTTATGGCTGATGGAGACTCGCCTGTGCAGAAAACCACCCAAAATGGGCATCATCATCAGGTTGAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGGAGTTCAGGTTCTGACCGTAACAACTCTGAAGCAGAACACAAACCGAAGGTGATTCCGCGCAGTGAAGCTCGGCCAAAACCCACGCCTGCACCGTCAGTTTCAACCCCTGCTTCCGCTTCTCAAAACAGACAAAGGCAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCTGCCAGAAGGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAGGCAAAGAACTATTCAGGTTATGGACATCAATGAGTTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGGAAGAACAAAGGTGGTGGTGGTTCTCAGGGAAGGCACTGGTGA 1068 0.5375 MDLDDFRSILDTSGVDVWMFIDAAIAVASADCAAELKRRRDSIVESLYSATAAPPQCRNCGDGHRLRPNGHQVAKQNSPSPSPERQPQRRAAAATANSPATPQSLENDDGGEELDPYGGLFDDEQKKILDIKEQLEEPDQSEDSLVELLQSLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLNPQGGSNTLMADGDSPVQKTTQNGHHHQVEIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVIPRSEARPKPTPAPSVSTPASASQNRQRQSSFDAERLASARRRLQENYKEAENAKRQRTIQVMDINELPKSKPKNAFFGKNKGGGGSQGRHW 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5378g00001 355 SMART TFS2_5 128 199 IPR003617 GO:0005634
Vium5378g00001 355 Coils Coil 297 324 - -
Vium5378g00001 355 MobiDBLite consensus disorder prediction 204 355 - -
Vium5378g00001 355 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 126 210 IPR035441 -
Vium5378g00001 355 MobiDBLite consensus disorder prediction 71 105 - -
Vium5378g00001 355 CDD TFIIS_I 125 198 - -
Vium5378g00001 355 MobiDBLite consensus disorder prediction 253 267 - -
Vium5378g00001 355 MobiDBLite consensus disorder prediction 298 320 - -
Vium5378g00001 355 Pfam TFIIS helical bundle-like domain 148 197 IPR017923 -
Vium5378g00001 355 MobiDBLite consensus disorder prediction 279 297 - -
Vium5378g00001 355 MobiDBLite consensus disorder prediction 204 230 - -
Vium5378g00001 355 ProSiteProfiles TFIIS N-terminal domain profile. 123 200 IPR017923 -
Vium5378g00001 355 MobiDBLite consensus disorder prediction 53 119 - -
Vium5378g00001 355 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 122 209 IPR035441 -
Vium5378g00001 355 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 355 IPR044790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5378g00001 Vium-Chr5378 31888 34509 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vium5378g00001 Med26 3.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5378g00001 - - gmx:100804034 550.821