Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5375g00002 ATGGAGTGTCTCTTGGGTTTCGCATCTTCTCTTTCAAGAGATTTAGTATGTGGAGCATTAAATCAATTACGTTATCCTTGTTGCTTTAACAATTTCGTCAAAAGGCTCGAACAAGAAGAGAGCGATTTGATTATAACGAGGGATAGTGTCCAAAAATTTGTTGCGCAGAGCAAGAAACAAACGAAAAAACCTAGTGAAATTGTGGACAAGTGGCTGGAAGATGCTAACGATGATGTATACAATGTGAATCAGTTGCTGAAAGAGGCAAAAACAAAAAATCATTGTTGCTTTGGGCACTGCCCAAATTGGATTTGGCGATACCATGTTGGAAAAAATTTAGCAAATAAAACTATGGACCTCGAAAAGTTCATTGAAAGTGGTAAAAAATACGTGCCATTTGACCGGATCACTACGCTTCCTTCAAACACCCTTGATACTCTTTTGGAAAAATGCATGAATTTTGAGAGTAGACAATCGGCATATGAGCAACTATTGGATGCAGTGAAAAATAAAGATGTTTCCATGATTGGGTTGTATGGGATGGGAGGTTGTGGTAAAACTACATTAGCAATGGAAACCAGGAAGTTCGTTGAAGCAGAACATCTTTTTGACAAAGTTCTTTTTGTGCCTATTTCTAGTACAGTGGAAGTTCGAAGGATCCAAGAAAAAATTGCAAGTTCAATACAGTTTGAATTTCCAGAAGCTGAAGAAATGGAAAGAGCCCAAAGATTATGCTTGAGATTAACTCAAGAGAAAAATATTTTTATAATTCTAGACGATGTGTGGGAGAAGCTTGACTTTGGTCGTATTGGGATTCCTTCTTCTAATCCCGGCTGCAAGATTCTCATTACCACTAGATCAGATTCAGTTTGTTCTTTAATGGATTGTCAAAGAAAGATTTACTTGCCAATTTTAACGGAGGAAGAAGCATGGACTCTTTTCCAAAATAAAGCATTTATATCAGAAGGCACCCCTGATACCTTAAAGGGTCTGGGAAGATTAATTTCCAATGAATGTAAAGGATTGCCGGTTGCCATTGCAGCTGTTGCTTGTAGTTTAAAGGGAAAAGAAGAGCCGGTATGGAGGGTTGCATTGAATAAATTGAAGCATTCTAAGCCAATAAATATTGAAAGAGGTTTGACTGATCCCTACAAGTGCTTGCAGTTGAGCTATGATAATTTGGATACTGAAGAAGCTAAATCACTTTTGCTGTTGTGCTCTGTGTTTCCTGAAGATTTTGAAATTGAAGTTGAACTTTTAACAAGATGTGCAATAGGAGTAGGTGTAGTTGGAGAAACTCTCTCATATGAAGAGGCAAGGAATGAAGTGATTGCAGCTAAAATTAAGCTTGTTAGTTGTTGTTTGTTGTTGGATGCAGATTATTAATGTGTCAAAATGCATGACTTAGTTCGTGATGTGGCCCACATAATAGCAAAAAATGAGAATATGATGATCAAGTGTGAAGAGCAAAAAGATGTTATTGTGGAACAAAATTCAATCAGATATCTATGGTGTGTGAAATTTCCAAAGGATTTGGATTGCTCAAATCTTGAGTTTTTATTTTTACGGACAAAGATGAAAGAACTTGATGGGATTTTCGAAAGAATGGGAGTGCTCAAAGTTTTGATTCTTGTCAATGATGAGGATGGAAAAACTCCATTGTCAACAGTATCTTTCAATACATTAACAAATCTTCGAGATCTATTAATTTACAATTGGGAATTGAGCGACTTCTCATTTTTAGGCGGTATGAAAAATCTTCAAAGTCTCTCGTTATTTTATTGTTTACTGCCTTCATTTCCTGAATTACAAACCAGTGTTGCAATTACACCAACAGCCTTAAAATTGTTAGAGTTGAATGAATGCGACATTAAAGTGAAGAATTTTGAAGTGGTGAAGAGAATCCCGCTTTTGGAAGAGTTGTACATTATAGATATTGAAGGACAATGGTATGCTAACAGTGAAGACAATATTGAATTCTTTAAGACGTTTAGTGTACCTGAAACTCTACAAAGGTATGGAATTGTATTAGGATCTCGTTATTTTGATGGTGGTAATTTTAAAGAATTTTCCTCATATGATAGAACTTTATTACTTAATTATTTTGACGTATCAAATGAGGTAATGAAGGGTTTGGCAAAAAATGCAAAGGATCTATTTGTAAGAAATATTCACAGAGGCGCAAAAAGTATCATCCCTGATATATTTCAAATTGAAGGAGGAGGTTTGAATGAGTTGAATACGTTGGAGATATGTGATTCTGAAGAGTTGGAATGTTTGATTGTTACTAGTAGTCACTCGAGTGAGGTGGTGACTCTTTTGTCCAACTTGCATACGTTGAAAATCAACTGCATGGCAAATCTAAAAGCTATATGGCATTGTTTTCTACCTGTCAATGGGCCTTTTAAGAACTTAGAGAAGCTGGATTTGAGTGTTTGTCCACGGCTGACTTCTCTCTTCACGTATGTTGTTGCTCGGAGTTTGGTACAATTGAAAATATTAAAAATATCAAGATGTGATGAACTGAAGCATATAGTAGCAGATGATGACAAAACGGGAAAAGGTCAAGATGAATTCACCACAGGACATCCTGTACAAATCTTCCAAAATCTTCAGGAAGTAGAGGTATATAGCTGTCCAGAATTAAAACATATATTCCCAGCCAACATTGTTGGAGGCTTAACTCAATTGAAAGTTCTCGAGATAAAAGAATGTGACATGTTAGATCAAATAATTTCAGATATTGTTCCCTTAACAGACCAGGATAGAAAAGAAGAACTTGATGAAATACTTGAGCAAGGAACTTTATCCAACCTTGCAAACCTTAAGATAACATGTTGCGGGAATTTAGACTCAATTTTTACAGCATCTATAGCTAAGACCTTGACTTCTTTGGAAGAATTGTACATACATGGGTGCAAAAGTTTGAAAGATATAGTAACTCACAAAAGGGTCAATAAAAATCAGGAGGAAATCATTGTTGAGGATGAGCATGATTGTCAGAGTGATATTTCAATCTTCCAAAGTTTGAAAAAGCTACATATCAGTGAATGTGACTTATTGGAGGGTATATTCCCCGTTTCTTTTGTTGGAGAATTGAATGATATAACAAATAAAGAGGATGCTGATTTGAAAGACTTCTCTAGTCGAAATAATACTCAAATTGAGCTTCCTGCTTTACAAGTACTTGAACTTGATCATATTAGGGATAGAATAATTGTTGGTAGTTATCATGTGATATGTCCATCTTTAAGAACACTATCATTGAATATTGGGAGATATGTTGGATTTTTCAACATAAATTGTTCAACAGATGCTTCAGAAGCTACAAAAAGAGATTTTATTGCAATCAAGATATCGAACTCGGATGTTGTTTCCCCGGTTGAAAGTGTTGAAGAATGTCTTTCAAAACAACCACATGGTTTGAACTTGATTATGATACACAATATTAGAGAGATTAAACTGAAAGGCTTTGATAAGGCAAGGTACCTTTTTAAACTGTCCATTGCTTCATCATTGATGTTGGAAATTTTGAGAATTTCGGAATGTGATGGACTTGAGTACATTATAGACACTGATGATGAATATGGCACAGAGAATATGAAGGCTATCTTTCCTAACTTAAAAGAGCTCTCAGTGTATAAATGTTTGCGGTTGAAATATATGTTTGGCCAATATCACGAAGCGAATAAGGATTATAAGGAGATTCATATTCAATTATCAGCATTGGAAATACTCTCTCTTAATGATCTACCAAACTTTGTTAGCATTTGTTCTACCTACACTCTCACTGTGACGTGGCCATCTTTGAAGAACTTTCATTGTAACAGTTGTTTCTATCCCTTTTATGGTTCTGTTAATTGTTTGACGATTATCACAATATATATTTTTTTCCTTAATGGACATGAAATGACTGAGCAACAAGTGAGTTTAAGGTTAAGGTATTTGTCGTTGGAATATCTACCTCAAATGACTTATATTTGGGTGGGTCCCAAGAATTCATTTACTCTCCAACATCTTACCACATTAAGAATAAGGGGATGTGGAATGTTGGAAGTAATCTTTCCTTCCTGTGTTTTAAGAAGCTTACCAGAGTTGAAGAGCCTAACCATATCAGAATGCATGGAACTGAAGCAGATTGTAGGGTGTGAAAAAGAAGAATCAAAGAATTCTTTTACCTTTCCAAATCTTAAAAGATTAGAAATATTTGGATGTCCAAAATTAGAAGTAATATTTTCGAAGTATGTTTTAAGATGCTTACCAGAGTTGAATCTTCTGCAGATAAGAAAATGCGAAAAATTAAAACAAATAATTGAAGAGGATGAAAAATTGTCTAATCATATTTCTCCTCAACCATGCTTTCCAAAACTAGAAGCGCTGTATGTTGGACATTGCCACAAGATGAAAAGATTATTCTCTGGATCTGCATCTAATGACCTTCCCAATCTTCATCTTTTGATCATAAATGGAGCCTTTGAACTAGAAGATCTTGTTGGATGTGAACAAGGAAATTGTGACGAGATAGGAAAACCTAAAGCTGAGCTTCCAAAACTCAAACTTCTAATATTTATGCATCTTTCAAACTTCCACCTAGATACTCATTTGTCGAATTTAAAGAATTGTGTTGTCTACAATTGTCCAAAACTCTCTTTCACTTCAACAACTACTCTTGGGAAGCTTATTGAAAATTTTCCTTATGAAGAAGATTTTAAAAACACTGTAGTTGAAAGATGGGAGTTTGAGGGCATCATAAGATTATTGAATGAAGATTCGACTATGAGCGGTAGCAGTGAGTTCCGTTCATCACAGGAGACTGGGGATATAGGAAATGAGAGTATTAAAGCTGCAGCAGAGGGAGCTAAGACAAAATCTTTGTCAAATGGTGTTGAAGACATTAGCATTGAAGGTGGTGCTGCAACTCACATTGAGTCTAGTGGCATGGACATACCTGCACTAGATTCAAATCTTGTTGAACAAGATGATAAGATGAATGAAGGAAAGCCAGGAATAGTGTTAAGTAAAGGAATCCAAATAGAAGAAGGGTTGAATCTTTTGGATAAACAAGAGGGAATAGATACTGTTTCGAACAACAACAGTGACATTTCTCCAGATATCCGTATAAGATTGGGAGAATATAAACATTTTGTTGAACTGGATGATGGACAAATATCTCTTCTGGTGGAGGCAATAACAACATATCCTCATCTTTGGAATGCTTGTGAGAGGTTTAGTGAGCGCTTTCAAGCTTGGAGGTTGAAAATTTTGGCAGATATGTTGTTGCTCCTTCAGAAGGAAAGTGGGGATAGTATGATTCCTCAAAGAGAAAAAGAGTTCCATAAATTATGTGAAGAAGCTATTGAAGTTGGATTTGAGAGTTCATGGGTAGAGGAAATGCGTCAACGTGTTGTGGCTAGGGATCATAAGCTGGGAGAGGACATCGCTAATAGACAAATAGATGAGAATTCTAAGAGGTATGACTATTTAAATTCTTAA 5493 0.3557 MECLLGFASSLSRDLVCGALNQLRYPCCFNNFVKRLEQEESDLIITRDSVQKFVAQSKKQTKKPSEIVDKWLEDANDDVYNVNQLLKEAKTKNHCCFGHCPNWIWRYHVGKNLANKTMDLEKFIESGKKYVPFDRITTLPSNTLDTLLEKCMNFESRQSAYEQLLDAVKNKDVSMIGLYGMGGCGKTTLAMETRKFVEAEHLFDKVLFVPISSTVEVRRIQEKIASSIQFEFPEAEEMERAQRLCLRLTQEKNIFIILDDVWEKLDFGRIGIPSSNPGCKILITTRSDSVCSLMDCQRKIYLPILTEEEAWTLFQNKAFISEGTPDTLKGLGRLISNECKGLPVAIAAVACSLKGKEEPVWRVALNKLKHSKPINIERGLTDPYKCLQLSYDNLDTEEAKSLLLLCSVFPEDFEIEVELLTRCAIGVGVVGETLSYEEARNEVIAAKIKLVSCCLLLDADYXCVKMHDLVRDVAHIIAKNENMMIKCEEQKDVIVEQNSIRYLWCVKFPKDLDCSNLEFLFLRTKMKELDGIFERMGVLKVLILVNDEDGKTPLSTVSFNTLTNLRDLLIYNWELSDFSFLGGMKNLQSLSLFYCLLPSFPELQTSVAITPTALKLLELNECDIKVKNFEVVKRIPLLEELYIIDIEGQWYANSEDNIEFFKTFSVPETLQRYGIVLGSRYFDGGNFKEFSSYDRTLLLNYFDVSNEVMKGLAKNAKDLFVRNIHRGAKSIIPDIFQIEGGGLNELNTLEICDSEELECLIVTSSHSSEVVTLLSNLHTLKINCMANLKAIWHCFLPVNGPFKNLEKLDLSVCPRLTSLFTYVVARSLVQLKILKISRCDELKHIVADDDKTGKGQDEFTTGHPVQIFQNLQEVEVYSCPELKHIFPANIVGGLTQLKVLEIKECDMLDQIISDIVPLTDQDRKEELDEILEQGTLSNLANLKITCCGNLDSIFTASIAKTLTSLEELYIHGCKSLKDIVTHKRVNKNQEEIIVEDEHDCQSDISIFQSLKKLHISECDLLEGIFPVSFVGELNDITNKEDADLKDFSSRNNTQIELPALQVLELDHIRDRIIVGSYHVICPSLRTLSLNIGRYVGFFNINCSTDASEATKRDFIAIKISNSDVVSPVESVEECLSKQPHGLNLIMIHNIREIKLKGFDKARYLFKLSIASSLMLEILRISECDGLEYIIDTDDEYGTENMKAIFPNLKELSVYKCLRLKYMFGQYHEANKDYKEIHIQLSALEILSLNDLPNFVSICSTYTLTVTWPSLKNFHCNSCFYPFYGSVNCLTIITIYIFFLNGHEMTEQQVSLRLRYLSLEYLPQMTYIWVGPKNSFTLQHLTTLRIRGCGMLEVIFPSCVLRSLPELKSLTISECMELKQIVGCEKEESKNSFTFPNLKRLEIFGCPKLEVIFSKYVLRCLPELNLLQIRKCEKLKQIIEEDEKLSNHISPQPCFPKLEALYVGHCHKMKRLFSGSASNDLPNLHLLIINGAFELEDLVGCEQGNCDEIGKPKAELPKLKLLIFMHLSNFHLDTHLSNLKNCVVYNCPKLSFTSTTTLGKLIENFPYEEDFKNTVVERWEFEGIIRLLNEDSTMSGSSEFRSSQETGDIGNESIKAAAEGAKTKSLSNGVEDISIEGGAATHIESSGMDIPALDSNLVEQDDKMNEGKPGIVLSKGIQIEEGLNLLDKQEGIDTVSNNNSDISPDIRIRLGEYKHFVELDDGQISLLVEAITTYPHLWNACERFSERFQAWRLKILADMLLLLQKESGDSMIPQREKEFHKLCEEAIEVGFESSWVEEMRQRVVARDHKLGEDIANRQIDENSKRYDYLNS 1830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5375g00002 1830 Gene3D - 390 476 IPR036388 -
Vium5375g00002 1830 Gene3D Ribonuclease Inhibitor 1312 1571 IPR032675 -
Vium5375g00002 1830 Coils Coil 72 92 - -
Vium5375g00002 1830 FunFam Probable disease resistance protein At1g61300 150 299 - -
Vium5375g00002 1830 Gene3D Ribonuclease Inhibitor 934 1297 IPR032675 -
Vium5375g00002 1830 Gene3D - 140 301 IPR027417 -
Vium5375g00002 1830 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 406 IPR027417 -
Vium5375g00002 1830 SUPERFAMILY RNI-like 1311 1547 - -
Vium5375g00002 1830 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 859 1088 - -
Vium5375g00002 1830 PRINTS Disease resistance protein signature 175 190 - -
Vium5375g00002 1830 PRINTS Disease resistance protein signature 248 262 - -
Vium5375g00002 1830 PRINTS Disease resistance protein signature 339 353 - -
Vium5375g00002 1830 PRINTS Disease resistance protein signature 800 816 - -
Vium5375g00002 1830 Gene3D - 305 389 IPR042197 -
Vium5375g00002 1830 Pfam NB-ARC domain 164 393 IPR002182 GO:0043531
Vium5375g00002 1830 SUPERFAMILY L domain-like 459 1023 - -
Vium5375g00002 1830 Gene3D Ribonuclease Inhibitor 699 928 IPR032675 -
Vium5375g00002 1830 Gene3D Ribonuclease Inhibitor 490 671 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5375g00002 Vium-Chr5375 16639 23833 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5375g00002 157 503 WRKY Transcription Factor Family AT5G45050 26.503 2.01e-10 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5375g00002 - - vra:106753628 2707.17