Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium536g00001 ATGAGTTTTTCTCATACAGAAAAACAAGAGGAGAAGCAATACGTGAAAAAGAAGAGAGAAGGAAAACTCCTCATAGCAACATTAATGTCAGAGCAGGAACCTCATTCTTGTGGCCTACTCTTGTTCTTTTTCTTGATCCTTCTTTCAGGTAAAGTTGTTATAGGGGAATCCTTGGAAACAGACAGAGAGGTTTTGCTGAAGCTGAAATCGTACCTGGACAGCAAAACTCTTCAAGACAAAGGAGCGTACACACACTGGAACACCAGTAGCTCCAATCCTTGTGAATGGAGTGGAATTTCATGCAGTGCTACGGGGAGGGTGGTTCGCATAGGCCTTTCTCAGAGTGACATCACCGGTGAGATATTCAAGAATTTCTCGCAGCTCACTGAACTCAGGTACCTTGATCTCTCTCAGAACACGCTCTCTGGTGAGATTCCTGAGGACTTGAGGCGCTGCTACAAGCTCGTGCATCTCAACCTATCACATAATATTCTAGAAGGGGAGCTGAACTTGACTGGATTGACAAGCTTGCACACACTGGACTTGTCAAATAACAGATTTTTTGGGGATATTGGGTTGAATTTCCCTGCCATTTGTGACAATTTAGTCACTCTGAACGTCTCAGGTAATAATAACTTGACTGGCAAGATCGAAAACTGCTTTGATAAATGTCTCAAGCTGCAGTACTTGGATTTGAGCACAAACAGTCTGAGTGGAAGCTTGTGGATGAAGTTTGCGAGGCTCAAAATGTTTTCTGTCGCGGAGAACCATCTGAGTGGGACTATTCCTTTGGAAGCTTTGCCTTTGAATTGCAGCCTTGAAGAACTAGACCTTTCACAAAATGGATTTGTTGGTGAGGCACCTAAGGGGGTTGCTAACTGCAAGAATTTAAGCATTCTGAATCTTTCTAGTAACAAATTTACTGGGGGTATCCCTGTCGAAATAGGATCCATTTCCCGGCTCAAAGCATTGTACTTGGGGAACAACACCTTTTCAAGAGAGATTCCTGAGTCCCTTCTGAACTTGACCAATTTGACCTTCTTGGATTTGAGCAGAAACCAATTTGGTGGGGAAATACAAGAGATATTTGGGAAATTTAGGCAAGTAAGTTTTCTTCTGTTGCACTCAAATAACTATACTGGAGGGTTGAGATCCTCAGGAATTCTGACATTGCCAAACCTTTGGCGGTTAGACGTAAGCTACAACAACTTTTCAGGTCCGTTACCAGTTGAGATCTCTCAAATGTCAAGTCTGAAGTTTCTAATGTTATGCTACAACCAGTTCAATGGATCAATTCCACCGGAATTTGGAAACATGACTCAACTGCAAGCGCTTGACCTTGCCTTCAACAATTTGAGTGGGTCTATACCACCAACCCTCGGAAAGTTAAACTCCCTCTTATGGTTGATGCTAGCAAACAATTCTTTAACTGGAGAAATCCCTCCAGAGTTGGGAAACTGTTCAAGCTTATTATGGCTAAACCTTGCCAACAATAAGCTCTCTGGAAAATTGCCTTCTGAACTGTCCAAAATTGGAAGGAATGCCACGACCACATTTGAATACAATAGGCGAAACTATAGAATGGTTGCTGGATCTGGTGAATGTTTGGCAATGAAGAGATGGATACCTGCAGATTACCCTCCATTCAGCTTTGTGTATGACCTCTTAACAAGGAAAAAATGTAGAGAACTTTGGGACAAATTGATCAAAGGGTACGGTGTTTTCCCGTTTTGCACACCTGGTAATTCCTCTCGCGTAACACAGATATCCGGGTATATTCAGCTAAGTTCGAACCAGCTCAGTGGTGAAATTCCTCCAGAGATTGGGACAATGGTCAACTTCAGCATGATGCACTTGGGGCTCAACAATCTCTCTGGGAAGTTACCTCGAGAGATGGGAAGTGTATCCCTGGTGGTATTAAACATCACAAGAAACGAGTTTTCAGGCGAAATTCCCCAAGAAATTGGCAACATGAAATGTCTGATGAATCTGGATCTGTCGTACAACAATTTCTCGGGAATGTTTCCAACGAATTTGAACAAATTGACAGAGCTTAGCAAGTTCAACGTCTCATACAATCCCTTCATATCAGGTGAGGTCCCATCAAACGGACAGTTCGCAACCTTTTTAGAAGATTCATATTTAGGTAACCCCCATTTGATCCTACCCCGGTTTCTTCAGAACACTAGCAATGACAGAAACACCACCTCTCAGAAAGACCATAAAAAGTCCTCAAGACTACCTTTGCTTTTGGTGTGTGCGGTCATAACACTGGTTTTCATAGTATGCGGACTTCTCACTATATTAGTCTGCGTATCTGTGAAAGGCCCTTCAGAGGAACCAAGATACCTCTTGAGGGACACAAAACAGTGGCATGATTCCAGCAGCTCCGGATCCTCATCATGGATGTCCGACACAGTGAAGGTCATCCGTTTGAACAAGACAGTTTTCACACATGCCGACATTCTGAAAGCAACTGGCAGCTTCTCCGAGGACAGAATCATAGGAAAAGGAGGGTTTGGAACAGTGTACAAGGGAGTGTTTTCAGACGGTAGACAAGTGGCAGTGAAGAAGCTTCAAAGGGAAGGCCTGGAGGGTGAGAAGGAATTCAAAGCTGAAATGGAGGTTCTGAGTGGTCATGGCTTTGGTTGGCCTCATCCAAACCTGGTCACACTCTACGGCTGGTGCCTAAACGAGTCAGAAAAGATACTAATTTATGAGTACATAGAAGGTGGAAGCTTGGAGGATGTAGTGATGGACAGAACACGTTTGACATGGAGGAGGAGGCTAGAAGTGGCAATCGATGTGGCACGTGCACTAGTGTATCTACACCACGAGTGCTACCCTTCTGTTGTGCACAGAGATGTGAAGGCCAGCAATGTGTTACTAGATAAAGATGGGAAGGCGAAGGTAACTGATTTTGGGCTTGCCAGAGTGGTTGATGTTGGGGATAGCCATGTGAGCACTATGGTGGCTGGGACAGTGGGGTACGTTGCACCTGAATATGGACACACATGGCAGGCTACTACAAAAGGGGATGTGTACAGTTTTGGGGTTTTGATCATGGAGCTTGCAGCAGCAAGAAGAGCAGTGGATGGAGGGGAAGAGTGCTTGGTGGAATGGGCGAGGCGTGTTATGGGTTATGGACGACACCATCATCGTCATCATCACGGCTTGAGTCGGTCTGTGCCAGTTCTGCTGATGGGTTCTGGGCTTGTCGGTGGGGCTGAGGAGATGACTGAGTTACTGAGGATTGGAGTGATGTGCACAGCTGATGCACCACAGGCCAGACCGAACATGAAAGAGGTTCTTGCTATGCTGATTAAGATATTTAACCTCAAGGACCACTCCACTTATGGATACATTGTTTAG 3372 0.4469 MSFSHTEKQEEKQYVKKKREGKLLIATLMSEQEPHSCGLLLFFFLILLSGKVVIGESLETDREVLLKLKSYLDSKTLQDKGAYTHWNTSSSNPCEWSGISCSATGRVVRIGLSQSDITGEIFKNFSQLTELRYLDLSQNTLSGEIPEDLRRCYKLVHLNLSHNILEGELNLTGLTSLHTLDLSNNRFFGDIGLNFPAICDNLVTLNVSGNNNLTGKIENCFDKCLKLQYLDLSTNSLSGSLWMKFARLKMFSVAENHLSGTIPLEALPLNCSLEELDLSQNGFVGEAPKGVANCKNLSILNLSSNKFTGGIPVEIGSISRLKALYLGNNTFSREIPESLLNLTNLTFLDLSRNQFGGEIQEIFGKFRQVSFLLLHSNNYTGGLRSSGILTLPNLWRLDVSYNNFSGPLPVEISQMSSLKFLMLCYNQFNGSIPPEFGNMTQLQALDLAFNNLSGSIPPTLGKLNSLLWLMLANNSLTGEIPPELGNCSSLLWLNLANNKLSGKLPSELSKIGRNATTTFEYNRRNYRMVAGSGECLAMKRWIPADYPPFSFVYDLLTRKKCRELWDKLIKGYGVFPFCTPGNSSRVTQISGYIQLSSNQLSGEIPPEIGTMVNFSMMHLGLNNLSGKLPREMGSVSLVVLNITRNEFSGEIPQEIGNMKCLMNLDLSYNNFSGMFPTNLNKLTELSKFNVSYNPFISGEVPSNGQFATFLEDSYLGNPHLILPRFLQNTSNDRNTTSQKDHKKSSRLPLLLVCAVITLVFIVCGLLTILVCVSVKGPSEEPRYLLRDTKQWHDSSSSGSSSWMSDTVKVIRLNKTVFTHADILKATGSFSEDRIIGKGGFGTVYKGVFSDGRQVAVKKLQREGLEGEKEFKAEMEVLSGHGFGWPHPNLVTLYGWCLNESEKILIYEYIEGGSLEDVVMDRTRLTWRRRLEVAIDVARALVYLHHECYPSVVHRDVKASNVLLDKDGKAKVTDFGLARVVDVGDSHVSTMVAGTVGYVAPEYGHTWQATTKGDVYSFGVLIMELAAARRAVDGGEECLVEWARRVMGYGRHHHRHHHGLSRSVPVLLMGSGLVGGAEEMTELLRIGVMCTADAPQARPNMKEVLAMLIKIFNLKDHSTYGYIV 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium536g00001 1123 PRINTS Leucine-rich repeat signature 174 187 - -
Vium536g00001 1123 PRINTS Leucine-rich repeat signature 131 144 - -
Vium536g00001 1123 FunFam Leucine-rich repeat receptor-like kinase 64 171 - -
Vium536g00001 1123 FunFam Putative LRR receptor-like serine/threonine-protein kinase 370 527 - -
Vium536g00001 1123 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 172 369 - -
Vium536g00001 1123 Gene3D Phosphorylase Kinase; domain 1 792 908 - -
Vium536g00001 1123 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 909 1115 - -
Vium536g00001 1123 Gene3D Ribonuclease Inhibitor 587 738 IPR032675 -
Vium536g00001 1123 Pfam Leucine rich repeat 123 163 IPR001611 GO:0005515
Vium536g00001 1123 ProSitePatterns Protein kinases ATP-binding region signature. 835 858 IPR017441 GO:0005524
Vium536g00001 1123 SUPERFAMILY L domain-like 107 264 - -
Vium536g00001 1123 Pfam Leucine rich repeat N-terminal domain 59 102 IPR013210 -
Vium536g00001 1123 SUPERFAMILY L domain-like 592 717 - -
Vium536g00001 1123 ProSitePatterns Serine/Threonine protein kinases active-site signature. 951 963 IPR008271 GO:0004672|GO:0006468
Vium536g00001 1123 SUPERFAMILY Protein kinase-like (PK-like) 810 1108 IPR011009 -
Vium536g00001 1123 Pfam Protein kinase domain 830 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium536g00001 1123 SUPERFAMILY L domain-like 79 505 - -
Vium536g00001 1123 FunFam Suppressor of npr1-1 constitutive 4 798 908 - -
Vium536g00001 1123 Gene3D Ribonuclease Inhibitor 386 530 IPR032675 -
Vium536g00001 1123 SMART serkin_6 829 1111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium536g00001 1123 Pfam Leucine Rich repeat 175 193 IPR001611 GO:0005515
Vium536g00001 1123 Pfam Leucine Rich repeat 342 358 IPR001611 GO:0005515
Vium536g00001 1123 ProSiteProfiles Protein kinase domain profile. 829 1119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium536g00001 1123 SMART LRR_typ_2 391 415 IPR003591 -
Vium536g00001 1123 SMART LRR_typ_2 463 487 IPR003591 -
Vium536g00001 1123 SMART LRR_typ_2 342 365 IPR003591 -
Vium536g00001 1123 SMART LRR_typ_2 128 152 IPR003591 -
Vium536g00001 1123 SMART LRR_typ_2 174 205 IPR003591 -
Vium536g00001 1123 SMART LRR_typ_2 439 462 IPR003591 -
Vium536g00001 1123 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 200 1107 - -
Vium536g00001 1123 Pfam Leucine Rich Repeat 201 224 IPR001611 GO:0005515
Vium536g00001 1123 CDD STKc_IRAK 835 1110 - -
Vium536g00001 1123 Gene3D Transferase(Phosphotransferase) domain 1 909 1119 - -
Vium536g00001 1123 Gene3D Ribonuclease Inhibitor 219 385 IPR032675 -
Vium536g00001 1123 Gene3D Ribonuclease Inhibitor 57 211 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium536g00001 Vium-Chr536 16019 19936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium536g00001 67 1110 Receptor kinase-like Gene Family AT4G39400 33.535 4.39e-151 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Vium536g00001 Pkinase 3.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium536g00001 - - vum:124845100 2211.8